hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg08825/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00134  ( 174 res)   mbg08825

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
ZnF_C2H2 zinc finger                                     70.5    2.1e-16   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
ZnF_C2H2   1/4      29    51 ..     1    23 []    17.4        2
ZnF_C2H2   2/4      57    79 ..     1    23 []    27.4   0.0019
ZnF_C2H2   3/4      97   119 ..     1    23 []    21.3     0.13
ZnF_C2H2   4/4     125   147 ..     1    23 []    23.4    0.032

Alignments of top-scoring domains:
ZnF_C2H2: domain 1 of 4, from 29 to 51: score 17.4, E = 2
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                        Cp+ Cgks   + +L rH ++H   
   mFLJ00134    29    VSCPE-CGKSPLKPaHLLRHRQSH    51   

ZnF_C2H2: domain 2 of 4, from 57 to 79: score 27.4, E = 0.0019
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      + Cp+ Cgk f++k++L+rH  +H   
   mFLJ00134    57    HACPE-CGKAFRRKeHLRRHRGTH    79   

ZnF_C2H2: domain 3 of 4, from 97 to 119: score 21.3, E = 0.13
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      + C + Cgk+f ++++L+rH ++H   
   mFLJ00134    97    HACCE-CGKTFYWReHLVRHRKTH    119  

ZnF_C2H2: domain 4 of 4, from 125 to 147: score 23.4, E = 0.032
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      + C + Cgk f ++++  rH+r+H   
   mFLJ00134   125    FACWE-CGKGFGRReHVLRHQRIH    147  

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