hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg08825/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00134  ( 174 res)   mbg08825

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
zf-C2H2  Zinc finger, C2H2 type                          86.2    6.9e-22   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
zf-C2H2    1/4      29    51 ..     1    24 []    16.8      0.5
zf-C2H2    2/4      57    79 ..     1    24 []    33.3  5.7e-06
zf-C2H2    3/4      97   119 ..     1    24 []    25.5   0.0013
zf-C2H2    4/4     125   147 ..     1    24 []    29.2  9.6e-05

Alignments of top-scoring domains:
zf-C2H2: domain 1 of 4, from 29 to 51: score 16.8, E = 0.5
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                       +Cp +Cgks   +++L rH+++H   
   mFLJ00134    29    VSCP-ECGKSPLKPAHLLRHRQSH    51   

zf-C2H2: domain 2 of 4, from 57 to 79: score 33.3, E = 5.7e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      + Cp +Cgk+F+rk++L+rH+ tH   
   mFLJ00134    57    HACP-ECGKAFRRKEHLRRHRGTH    79   

zf-C2H2: domain 3 of 4, from 97 to 119: score 25.5, E = 0.0013
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      + C  +Cgk+F  +++L rH++tH   
   mFLJ00134    97    HACC-ECGKTFYWREHLVRHRKTH    119  

zf-C2H2: domain 4 of 4, from 125 to 147: score 29.2, E = 9.6e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      + C  +Cgk F r+++  rH+r+H   
   mFLJ00134   125    FACW-ECGKGFGRREHVLRHQRIH    147  

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