hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/msh/msh02074/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mFLJ00132  ( 870 res)   msh02074

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RRM      RNA recognition motif                           49.8    3.5e-10   1
ZnF_U1   U1-like zinc finger                             28.1     0.0012   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
ZnF_U1     1/1      14    48 ..     1    37 []    28.1   0.0012
RRM        1/1      58   125 ..     1   121 []    49.8  3.5e-10

Alignments of top-scoring domains:
ZnF_U1: domain 1 of 1, from 14 to 48: score 28.1, E = 0.0012
                   *->tggfyCklCnvtfkddeisvreaHlkGkkHkknvkky<-*
                       g+f C lC+vt   +++s+ +aHlkG+kH+  v+++   
   mFLJ00132    14    RGRFRCCLCDVTTA-NRPSL-DAHLKGRKHRDLVQLR    48   

RRM: domain 1 of 1, from 58 to 125: score 49.8, E = 3.5e-10
                   *->tlfVgNLndppdvteedLrelFkevksvevfraeteskfGkvvsvri
                      ++fV+++  p dv   +L e+F              + fG+v ++ +
   mFLJ00132    58    SVFVSGF--PRDVGSAQLSEYF--------------QTFGPVANIVM 88   

                   vrdkdnilirressleqkvqlgkdsgTGkskGfaFVeFedeedAekAlli
                    +dk                            fa Ve+ d ++ e++  +
   mFLJ00132    89 DKDKG--------------------------VFAIVEMGDISAREAV--L 110  

                   ealnaskGkeledgGrptlglrVe<-*
                   ++      + l  gG+    lrV+   
   mFLJ00132   111 SQPK----HSL--GGHG---LRVR    125  

//