hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/msh/msh02074/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00132  ( 870 res)   msh02074

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
RRM_1     RNA recognition motif. (a.k.a. RRM, RBD, or    42.9    7.4e-09   1
PAP_assoc PAP/25A associated domain                      41.9    1.4e-08   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
RRM_1       1/1      59   124 ..     1    74 []    42.9  7.4e-09
PAP_assoc   1/1     494   553 ..     1    69 []    41.9  1.4e-08

Alignments of top-scoring domains:
RRM_1: domain 1 of 1, from 59 to 124: score 42.9, E = 7.4e-09
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      +fV+++p+d+  ++L ++F+ fGp+  ++iv D     +    fa V
   mFLJ00132    59    VFVSGFPRDVGSAQLSEYFQTFGPV--ANIVMD-----KDKGVFAIV 98   

                   eFedeedAekAldalnGkelggrelrv<-*
                   e+ d ++ e++l+  +++ lgg+ lrv   
   mFLJ00132    99 EMGDISAREAVLS-QPKHSLGGHGLRV    124  

PAP_assoc: domain 1 of 1, from 494 to 553: score 41.9, E = 1.4e-08
                   *->sLGvLLigFFeyYgrreFdyedfvIsirtGqsgsllpKeekgwdkkn
                      +L++LL +FF + ++   d     +s r   +g++l ++e  ++ ++
   mFLJ00132   494    PLSSLLAQFFSCVSC--LDLSGSLLSLR---EGRPLMVAEGLPSDLW 535  

                   dsklnirqpspLcIeDPfdtsn<-*
                       ++ + +p++++DPfd+s+   
   mFLJ00132   536 ----EGLRLGPMNLQDPFDLSH    553  

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