hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg03580/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00128  ( 1517 res)   mbg03580

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PH       Pleckstrin homology domain.                     42.7    4.9e-08   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PH         1/1    1305  1413 ..     1    82 []    42.7  4.9e-08

Alignments of top-scoring domains:
PH: domain 1 of 1, from 1305 to 1413: score 42.7, E = 4.9e-08
                   *->vikeGwLlkks......k.swkkryfvLfngvLlyyksk........
                      +  +G+Ll++ + +   +++   r+++Lf++ Ll+ k k++++++++
   mFLJ00128  1305    LKEQGQLLHRDpftvicGrKKCLRHVFLFEDLLLFSKLKgseggset 1351 

                   .kpkgsipLsgcsvre.p.....cFeivt.dr....tlllqAeseeeree
                     +k  +   ++ ++e+ ++++ cFe++++ r+ ++ ++lqA s+e++ +
   mFLJ00128  1352 fVYKQAFKTADMGLTEnIgdsglCFELWFrRRrareAYTLQATSPETKLK 1401 

                   Wvealqsaiaka<-*
                   W +++ +++ ++   
   mFLJ00128  1402 WTSSIAQLLWRQ    1413 

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