hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/msk/msk07274/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00127  ( 641 res)   msk07274

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
BTB      Broad-Complex, Tramtrack and Bric a brac       102.9    3.8e-26   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
BTB        1/1      73   170 ..     1   114 []   102.9  3.8e-26

Alignments of top-scoring domains:
BTB: domain 1 of 1, from 73 to 170: score 102.9, E = 3.8e-26
                   *->cDvtlvvggdlggdnaegkkfhasqHkavLaacrrdSpyFkalfes.
                      cDv+lvv++         ++++a  H+ +La c   S+yF ++f+ +
   mFLJ00127    73    CDVVLVVEE---------QQVPA--HRNLLAVC---SDYFNSMFTLg 105  

                   ........ieldDeallievspeaFralLnflYt.kldlpeedvenveel
                    ++  ++++el +       s+  ++a+++flY+++l+l+ +   n++ +
   mFLJ00127   106 mreafqkeVELVG------TSYVGLKAVVDFLYSsELELDGS---NIDYI 146  

                   LelAdfldSYGqip.lvelCeefllknl<-*
                   Le+A++l    qi ++v+ C+e+l++     
   mFLJ00127   147 LETAHLL----QIWtVVDFCCEYLEQEV    170  

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