hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/msj/msj07117/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00123  ( 490 res)   msj07117

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SPRY     Domain in SPla and the RYanodine Receptor.      64.1    1.8e-14   1
BBOX     B-Box-type zinc finger, protein interaction     49.3    5.1e-10   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
BBOX       1/1      82   123 ..     1    51 []    49.3  5.1e-10
SPRY       1/1     343   490 .]     1   145 []    64.1  1.8e-14

Alignments of top-scoring domains:
BBOX: domain 1 of 1, from 82 to 123: score 49.3, E = 5.1e-10
                   *->eraplCeeHgdeepaeffCveedgallCrdCdeageHqanklfrgHr
                       ++  C++H+  e +++fC e d++++C++C+e++ H      + H 
   mFLJ00123    82    NEQGICPRHQ--EALKLFC-EVDEEAICVVCRESRSH------KQHS 119  

                   vvll<-*
                   vv+l   
   mFLJ00123   120 VVPL    123  

SPRY: domain 1 of 1, from 343 to 490: score 64.1, E = 1.8e-14
                   *->sGkhYfEVevdtggdkghwrvGvatksvhly.p.f.k..........
                      sG+hY+EVev++  +   w vG a++s h  +  ++++++ ++++ +
   mFLJ00123   343    SGRHYWEVEVGGRRG---WAVGAARESTHHKeKvGsGgssvssgdas 386  

                   ......vrrkrkggvsllGedkgSwgyrgdggkkyhasefgeeyglpfqe
                   ++++++ rr+   ++ ll +    w++  +g k+y a  + e++ l++ e
   mFLJ00123   387 ssrhhhRRRRLHLPQQLLLQR-EVWCVGTHG-KRYQAQSSTEQTLLSPCE 434  

                   pgDviGcflDleaggStisFykNGkyLgdshilaffdvtfs.gpLyPavs
                   ++++ G++lD+eag   + Fy++ +     +++++f++ f ++ ++P++ 
   mFLJ00123   435 KPRRFGVYLDYEAG--RLGFYNADTL----AHVHTFSAAFLgERVFPFFR 478  

                   lgstdgGgesvrlnfGpp<-*
                   + s     +++r+ ++p    
   mFLJ00123   479 VLS-----KGTRIKLCP-    490  

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