hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/msj/msj07117/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00123  ( 490 res)   msj07117

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SPRY     SPRY domain                                     78.6    1.3e-19   1
zf-B_box B-box zinc finger                               56.4    6.3e-13   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
zf-B_box   1/1      84   123 ..     1    46 []    56.4  6.3e-13
SPRY       1/1     343   490 .]     1   154 []    78.6  1.3e-19

Alignments of top-scoring domains:
zf-B_box: domain 1 of 1, from 84 to 123: score 56.4, E = 6.3e-13
                   *->ervCpeHgekaslfCedDqalLCvvCdesgeHsanklargHtvvpl<
                         Cp+H+e ++lfCe D++++CvvC+es+ H      + H vvpl 
   mFLJ00123    84    QGICPRHQEALKLFCEVDEEAICVVCRESRSH------KQHSVVPL  123  

                   -*
                     
   mFLJ00123     -    -    

SPRY: domain 1 of 1, from 343 to 490: score 78.6, E = 1.3e-19
                   *->sGkhYfEVevdtgggepthwrvGwatksvhlp.pgfdl.........
                      sG+hY+EVev+++ g    w+vG a++s h ++  +  +++ ++++ 
   mFLJ00123   343    SGRHYWEVEVGGRRG----WAVGAARESTHHKeKVGSGgssvssgda 385  

                   .......r.sskrkggerllGddegswgydgsggkkyhagesgepyglpf
                   +++++++r+++ + + + ll ++   w++  +g k+y+a  s e + l+ 
   mFLJ00123   386 sssrhhhRrRRLHLPQQLLLQRE--VWCVGTHG-KRYQAQSSTEQTLLSP 432  

                   qekgdviGcflDyeagVtisFtkNGkyLgdsEshiyaFrnvtfdkkpggp
                    ek+++ G++lDyeag  + F+++ +       h+++F+ + f    g+ 
   mFLJ00123   433 CEKPRRFGVYLDYEAG-RLGFYNADTL-----AHVHTFS-AAFL---GER 472  

                   LyPavslgsadgggeairlnfgqlp<-*
                   ++P++ + s+   g+ i+l     p   
   mFLJ00123   473 VFPFFRVLSK---GTRIKL----CP    490  

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