hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mtj/mtj01003/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00120  ( 1173 res)   mtj01003

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
CARD     Caspase recruitment domain                      90.0    4.8e-23   1
PDZ      PDZ domain (Also known as DHR or GLGF)          10.2       0.17   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
CARD       1/1      42   128 ..     1    89 []    90.0  4.8e-23
PDZ        1/1     682   771 ..     1    82 []    10.2     0.17

Alignments of top-scoring domains:
CARD: domain 1 of 1, from 42 to 128: score 90.0, E = 4.8e-23
                   *->rellrknRvaLvrrlgketldglLDyLleknVLteeeyEeIkaa..n
                      +++++ nR++L r ++   + +l++yL++++V+ e++++e+++a+  
   mFLJ00120    42    WDNVECNRHMLSRYIN---PAKLTPYLRQCKVIDEQDEDEVLNApmL 85   

                   ttrrdkareLldlvqkkGpeafqiFleaLretgqphLadllels<-*
                   ++  ++a++Lld++ +kG++++ +Fle+L++ ++p L++l++++   
   mFLJ00120    86 PSKINRAGRLLDILHTKGQRGYVVFLESLEF-YYPELYKLVTGK    128  

PDZ: domain 1 of 1, from 682 to 771: score 10.2, E = 0.17
                   *->evtlekevkrgglGf..sikggsdk..givvsevlpGsgaAeagGrL
                         +++  + +g G+ +++   + + +g ++ +v pG + Ae++G L
   mFLJ00120   682    GPLVQHT-TLNGDGLitQLTLLGGNarGSFIHSVKPG-SLAERAG-L 725  

                   keGDqIlsvNG........qdvenlsheravlalkgsggsevtLtil<-*
                   +eG+q+l + G  +++++++++   + e+a+  +++++g  +tL  +   
   mFLJ00120   726 REGHQLLLLEGcirgerqsVPLDACTKEEARWTIQRCSG-LITLHYK    771  

//