hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/msh/msh01306/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00114  ( 1188 res)   msh01306

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
VWA       von Willebrand factor (vWF) type A domain     159.4    3.7e-43   1
Int_alpha Integrin alpha (beta-propellor repeats).      154.7    9.4e-42   5

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
Int_alpha   1/5      52   102 ..     1    56 []     9.4       21
VWA         1/1     169   350 ..     1   193 []   159.4  3.7e-43
Int_alpha   2/5     421   470 ..     1    56 []    25.2   0.0089
Int_alpha   3/5     474   531 ..     1    56 []    39.8  3.7e-07
Int_alpha   4/5     537   593 ..     1    56 []    61.1  1.5e-13
Int_alpha   5/5     600   654 ..     1    56 []    19.8     0.38

Alignments of top-scoring domains:
Int_alpha: domain 1 of 5, from 52 to 102: score 9.4, E = 21
                   *->pgsyFGysvagvgDlngDksGypDlllvGAPr........GaVYvyf
                      +g+ FG sv +        +   + ++vGAP++ + +++ G  Y++ 
   mFLJ00114    52    DGAEFGHSVLQ--------YDSSW-VVVGAPKeikatnqiGGLYKCG 89   

                   gssnsgggrciplqnls<-*
                    +    +g+c+p++      
   mFLJ00114    90 YH----TGNCEPISLQV    102  

VWA: domain 1 of 1, from 169 to 350: score 159.4, E = 3.7e-43
                   *->plDvvfllDgSgSmggnrfekvkefv.klveqld..gdrvglvqFss
                      + D+vfl+DgSgS++  +fek+++fv+++++ql+++++r++l+qFs+
   mFLJ00114   169    DQDIVFLIDGSGSISSTDFEKMLDFVkAVMSQLQrpSTRFSLMQFSD 215  

                   dvrvefpln.sqskdallealaslsykglkdyslgggTnlg.ALqyalen
                    +rv f++n++ s ++ l+ l+s+++       l g+T++++A+++++ +
   mFLJ00114   216 YFRVHFTFNnFISTSSPLSLLDSVRQ-------LRGYTYTAsAIKHVITE 258  

                   lfsesag.rrgagratkiSnvpkvliliTDGesndggddpedileaakel
                   lf+ ++g r +a          kvli+iTDG+ +    d+  +  ++  +
   mFLJ00114   259 LFTTQSGaRQDA---------TKVLIVITDGRKQG---DNLSYDSVIPMA 296  

                   krsgvkvfvigvgna.....de.elkeiasep.gehvffdvsdvedlpsl
                     + ++ ++igvg a  +++ ++elk+ias+p+ e+vf      ++ +++
   mFLJ00114   297 EAASIIRYAIGVGKAfynehSKqELKAIASMPsHEYVF-----SVENFDA 341  

                   ldllidlll<-*
                   l+++ ++l+   
   mFLJ00114   342 LKDIENQLK    350  

Int_alpha: domain 2 of 5, from 421 to 470: score 25.2, E = 0.0089
                   *->pgsyFGysvagvgDlngDksGypDlllvGAPr....GaVYvyfgssn
                       ++y+Gys a +       +G  + l+ GAPr++++G+V+++ ++  
   mFLJ00114   421    RDAYLGYSTALAFW-----KGVHS-LILGAPRhqhtGKVVIFTQE-- 459  

                   sgggrciplqnls<-*
                     ++++ p + ++   
   mFLJ00114   460 --SRHWRPKSEVR    470  

Int_alpha: domain 3 of 5, from 474 to 531: score 39.8, E = 3.7e-07
                   *->pgsyFGysvagvgDlngDksGypDlllvGAPr.......GaVYvyfg
                      +gsyFG s++  +D + D  G +Dl+l+G P   +++++G+V v++ 
   mFLJ00114   474    IGSYFGASLC-SVDMDRD--GSTDLVLIGVPHyyehtrgGQVSVCPM 517  

                   ssnsgggrciplqnls<-*
                    +   g+r+    +l    
   mFLJ00114   518 PGV--GRRWHCGTTLH    531  

Int_alpha: domain 4 of 5, from 537 to 593: score 61.1, E = 1.5e-13
                   *->pgsyFGysvagvgDlngDksGypDlllvGAPr.....GaVYvyfgss
                      p+++FG +++ +gD+ngD  +  D +++GAP++++++GaVY+++g s
   mFLJ00114   537    PWGRFGAALTVLGDVNGD--SLAD-VAIGAPGeeenrGAVYIFHGAS 580  

                   nsgggrciplqnls<-*
                    +++   +p+q +s   
   mFLJ00114   581 -RQDIAPSPSQRIS    593  

Int_alpha: domain 5 of 5, from 600 to 654: score 19.8, E = 0.38
                   *->pgsyFGysvagvgDlngDksGypDlllvGAPr.....GaVYvyfgss
                         yFG s+ g+ Dl  D  G  D l+vG+ ++    +  +++++s+
   mFLJ00114   600    RIQYFGQSLSGGQDLTRD--GLVD-LAVGSKGrvlllRTRPILRVSP 643  

                   nsgggrciplqnls<-*
                      + +++p+ + +   
   mFLJ00114   644 ---TVHFTPAEISR    654  

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