hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/msh/msh01306/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00114  ( 1188 res)   msh01306

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N 
--------       -----------                              -----    ------- ---
VWA            von Willebrand factor type A domain      205.0    1.1e-57   1
FG-GAP         FG-GAP repeat                             79.4    7.2e-20   3
Integrin_alpha Integrin alpha cytoplasmic region         26.4    0.00065   1

Parsed for domains:
Model          Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------       ------- ----- -----    ----- -----      -----  -------
VWA              1/1     171   349 ..     1   195 []   205.0  1.1e-57
FG-GAP           1/3     478   515 ..     1    36 []    27.9  0.00024
FG-GAP           2/3     542   576 ..     1    36 []    31.4  2.1e-05
FG-GAP           3/3     604   633 ..     1    36 []    24.6   0.0023
Integrin_alpha   1/1    1157  1171 ..     1    15 []    26.4  0.00065

Alignments of top-scoring domains:
VWA: domain 1 of 1, from 171 to 349: score 205.0, E = 1.1e-57
                   *->DivFllDgSgSigeenlFekvkdFvkklveknldigpdgtrVglvqY
                      DivFl+DgSgSi++ + Fek+ dFvk +++ +l   + +tr++l+q+
   mFLJ00114   171    DIVFLIDGSGSISSTD-FEKMLDFVKAVMS-QL--QRPSTRFSLMQF 213  

                   ssdvrtefsLndysskddllaavlknlrylgGgTnNtgkALkyalenlfs
                   s++ r++f++n++ s+++ l+++ + +r+l G T+ t++A+k+++ +lf+
   mFLJ00114   214 SDYFRVHFTFNNFISTSSPLSLL-DSVRQLRGYTY-TASAIKHVITELFT 261  

                   stMikrnrsagsRpenapkvlillTDGksndggdve.aaaalrdkkkgvg
                   +       ++g+R+ +a+kvli++TDG+ +++ + ++ ++  +++     
   mFLJ00114   262 T-------QSGARQ-DATKVLIVITDGRKQGDNLSYdSVIPMAEA---AS 300  

                   itvfavGvG....gdvdeaeLr.iasepeseghvfyvedfdalwlelqdi
                   i+++a+GvG+   + ++++eL+ ias p s ++vf ve+fda  l+  di
   mFLJ00114   301 IIRYAIGVGkafyNEHSKQELKaIASMP-SHEYVFSVENFDA--LK--DI 345  

                   qeql<-*
                   ++ql   
   mFLJ00114   346 ENQL    349  

FG-GAP: domain 1 of 3, from 478 to 515: score 27.9, E = 0.00024
                   *->fgssvaagDlnGDGrpDlvv.gaPgadggt.dgsvyll<-*
                      fg+s++ +D+++DG +Dlv+ g+P ++++t++g+v++    
   mFLJ00114   478    FGASLCSVDMDRDGSTDLVLiGVPHYYEHTrGGQVSVC    515  

FG-GAP: domain 2 of 3, from 542 to 576: score 31.4, E = 2.1e-05
                   *->fgssvaagDlnGDGrpDlvvgaPgadggt.d..gsvyll<-*
                      +++  ++gD+nGD ++D+++gaP    g ++++g+vy++   
   mFLJ00114   542    GAALTVLGDVNGDSLADVAIGAP----GEeEnrGAVYIF    576  

FG-GAP: domain 3 of 3, from 604 to 633: score 24.6, E = 0.0023
                   *->fgssvaag.DlnGDGrpDlvvgaPgadggt.dgsvyll<-*
                      fg+s+++g+Dl++DG+ Dl+v       g+++ +v ll   
   mFLJ00114   604    FGQSLSGGqDLTRDGLVDLAV-------GSkG-RVLLL    633  

Integrin_alpha: domain 1 of 1, from 1157 to 1171: score 26.4, E = 0.00065
                   *->KcGFFKRkykpqeee<-*
                      K GFFKR+yk++ ee   
   mFLJ00114  1157    KAGFFKRQYKEMLEE    1171 

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