hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mpj/mpj01066/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00110  ( 244 res)   mpj01066

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
HLH      helix loop helix domain                         47.4    1.9e-09   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
HLH        1/1      94   146 ..     1    61 []    47.4  1.9e-09

Alignments of top-scoring domains:
HLH: domain 1 of 1, from 94 to 146: score 47.4, E = 1.9e-09
                   *->narERrlrRRekiNeqafdeLrslvPtlpkgggnskKlsKasiLrlA
                      n++E+  +RR+k++  ++++L++lvP  p    +s++ + +s L++A
   mFLJ00110    94    NELEK--HRRAKLRL-YLEQLKQLVPLGP----DSTRHTTLSLLKRA 133  

                   ieYIrksLqeqlqe<-*
                     +I k+L+eq +    
   mFLJ00110   134 KMHI-KKLEEQDRR    146  

//