hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/msk/msk03256/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00108  ( 289 res)   msk03256

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TSP1     Thrombospondin type 1 repeats                   38.4    9.8e-07   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TSP1       1/1     238   289 .]     1    66 []    38.4  9.8e-07

Alignments of top-scoring domains:
TSP1: domain 1 of 1, from 238 to 289: score 38.4, E = 9.8e-07
                   *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg
                      +s Ws+W+ C g +CG+     g ++RtR+    +   p+    n+g
   mFLJ00108   238    VSLWSSWGLCGG-PCGKL----GAKSRTRY----VRVQPA----NNG 271  

                   epCs...EtrpCntqpnLqpCp<-*
                    pC++ +E  +C ++    +C    
   mFLJ00108   272 TPCPeleEEAECAPD----NCV    289  

//