hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/msk/msk03256/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00108  ( 289 res)   msk03256

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Spond_N  Spondin_N                                      446.6   2.1e-130   1
TSP_1    Thrombospondin type 1 domain                    15.7     0.0054   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Spond_N    1/1       1   209 [.     1   253 []   446.6 2.1e-130
TSP_1      1/1     239   288 ..     1    55 []    15.7   0.0054

Alignments of top-scoring domains:
Spond_N: domain 1 of 1, from 1 to 209: score 446.6, E = 2.1e-130
                   *->dgsLTkrrlCeekpdalasppatptaplttCcAcdeAkYrlvFeGkW
                                                            Y+++F+GkW
   mFLJ00108     1    --------------------------------------YSITFIGKW 9    

                   SrnThPKDYPlfrpptqWskliGasHSsnYrLWeyGgyASeGmKefAEwG
                   S++++PK+YPlfrpp+qWs+l+Ga+HSs+Y++W++++y+S+G+++fAE+G
   mFLJ00108    10 SQTAFPKQYPLFRPPAQWSSLLGAAHSSDYSMWRKNEYVSNGLRDFAERG 59   

                   stvkLekEirEkaqgqevRsVikafglpaiwqPPngtGttsaefrVdprH
                   ++++L+kEi  +a+g++++sV+++f++pai   P+gtG+ts+e++V+prH
   mFLJ00108    60 EAWALMKEI--EAAGEKLQSVHAVFSAPAI---PSGTGQTSTELEVHPRH 104  

                   hlvSLatkigPSPDWfVGVdgLeLClgdCtWkEevtfdLyPwDAGTDSGf
                   +lvS++++i+PSPDWfVG+d+L+LC+g+ +WkE+v++dLyP+DAGTDSGf
   mFLJ00108   105 SLVSFVVRIVPSPDWFVGIDSLDLCEGG-RWKEQVVLDLYPHDAGTDSGF 153  

                   TysSPNePTiPqevIrrITSsyPshPasPFYyprgkplpPlAtvyltRkk
                   T+sSPN++TiPq+++++IT+s+PshPa++FYypr+k+lpP+A+v++ R++
   mFLJ00108   154 TFSSPNFATIPQDTVTEITASSPSHPANSFYYPRLKSLPPIAKVTFVRLQ 203  

                   ryerec<-*
                     +r++   
   mFLJ00108   204 QSPRAF    209  

TSP_1: domain 1 of 1, from 239 to 288: score 15.7, E = 0.0054
                   *->spWseWSpCSVTCG.kGirtRqRvcnspaPqkkggepCtgdvqelet
                      s Ws W  C  +CG+ G ++R+R++  + P   +g pC++  +e   
   mFLJ00108   239    SLWSSWGLCGGPCGkLGAKSRTRYVRVQ-PA-NNGTPCPELEEE--- 280  

                   eaCdmmdkC<-*
                     C   d C   
   mFLJ00108   281 AEC-APDNC    288  

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