hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mfj/mfj24090/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mFLJ00107 ( 1371 res) mfj24090 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- ZnF_C2H2 zinc finger 453.6 1e-131 30 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- ZnF_C2H2 1/30 107 128 .. 1 23 [] 7.0 51 ZnF_C2H2 2/30 178 200 .. 1 23 [] 25.3 0.0086 ZnF_C2H2 3/30 206 228 .. 1 23 [] 20.2 0.3 ZnF_C2H2 4/30 234 256 .. 1 23 [] 26.7 0.0032 ZnF_C2H2 5/30 262 284 .. 1 23 [] 22.6 0.054 ZnF_C2H2 6/30 306 329 .. 1 23 [] 17.8 1.5 ZnF_C2H2 7/30 341 364 .. 1 23 [] 18.8 0.77 ZnF_C2H2 8/30 370 392 .. 1 23 [] 19.8 0.39 ZnF_C2H2 9/30 465 489 .. 1 23 [] 18.4 0.99 ZnF_C2H2 10/30 497 520 .. 1 23 [] 21.2 0.14 ZnF_C2H2 11/30 537 560 .. 1 23 [] 24.1 0.02 ZnF_C2H2 12/30 573 596 .. 1 23 [] 21.5 0.12 ZnF_C2H2 13/30 620 645 .. 1 23 [] 16.3 4.2 ZnF_C2H2 14/30 694 716 .. 1 23 [] 27.0 0.0025 ZnF_C2H2 15/30 724 746 .. 1 23 [] 29.5 0.00047 ZnF_C2H2 16/30 754 777 .. 1 23 [] 27.9 0.0014 ZnF_C2H2 17/30 782 805 .. 1 23 [] 24.2 0.018 ZnF_C2H2 18/30 812 835 .. 1 23 [] 24.6 0.014 ZnF_C2H2 19/30 843 865 .. 1 23 [] 22.9 0.046 ZnF_C2H2 20/30 869 892 .. 1 23 [] 21.7 0.1 ZnF_C2H2 21/30 946 969 .. 1 23 [] 16.3 4.2 ZnF_C2H2 22/30 990 1012 .. 1 23 [] 32.3 6.8e-05 ZnF_C2H2 23/30 1019 1041 .. 1 23 [] 27.9 0.0014 ZnF_C2H2 24/30 1048 1070 .. 1 23 [] 12.9 11 ZnF_C2H2 25/30 1080 1102 .. 1 23 [] 5.6 74 ZnF_C2H2 26/30 1198 1221 .. 1 23 [] 23.0 0.04 ZnF_C2H2 27/30 1255 1277 .. 1 23 [] 22.6 0.056 ZnF_C2H2 28/30 1285 1307 .. 1 23 [] 19.4 0.52 ZnF_C2H2 29/30 1316 1339 .. 1 23 [] 22.4 0.063 ZnF_C2H2 30/30 1346 1369 .. 1 23 [] 18.1 1.3 Alignments of top-scoring domains: ZnF_C2H2: domain 1 of 30, from 107 to 128: score 7.0, E = 51 *->ykCpigCgksfssk.aLkrHmrvH<-* + C+ C ++f s ++ ++H H mFLJ00107 107 HSCDS-CLQVFESLsDITEHKI-H 128 ZnF_C2H2: domain 2 of 30, from 178 to 200: score 25.3, E = 0.0086 *->ykCpigCgksfssk.aLkrHmrvH<-* y C++ C+ksfs+ + Lk+H ++H mFLJ00107 178 YPCQF-CDKSFSRLsYLKHHEQSH 200 ZnF_C2H2: domain 3 of 30, from 206 to 228: score 20.2, E = 0.3 *->ykCpigCgksfssk.aLkrHmrvH<-* +kC++ C++ f++k++ rH++ H mFLJ00107 206 FKCTY-CSRLFKHKrSRDRHIKLH 228 ZnF_C2H2: domain 4 of 30, from 234 to 256: score 26.7, E = 0.0032 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ C+ fs+ ++Lk H+++H mFLJ00107 234 YHCSE-CDAAFSRSdHLKIHLKTH 256 ZnF_C2H2: domain 5 of 30, from 262 to 284: score 22.6, E = 0.054 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC + C + f s ++L Hm+vH mFLJ00107 262 YKCAV-CRRGFLSSsSLHGHMQVH 284 ZnF_C2H2: domain 6 of 30, from 306 to 329: score 17.8, E = 1.5 *->ykCpigCgksfssk.aLkrHmr.vH<-* kC++ C + f +++L++H+ + H mFLJ00107 306 QKCSQ-CEEGFDFPeDLQKHIAeCH 329 ZnF_C2H2: domain 7 of 30, from 341 to 364: score 18.8, E = 0.77 *->ykCpigCgksfssk.aLkrHmr.vH<-* ++C + C++ f +++L +H+ +vH mFLJ00107 341 LQCMY-CHELFVEEtSLMNHIEqVH 364 ZnF_C2H2: domain 8 of 30, from 370 to 392: score 19.8, E = 0.39 *->ykCpigCgksfssk.aLkrHmrvH<-* C+i C++sf + ++L Hm +H mFLJ00107 370 NSCSI-CSESFLTVeELYSHMDSH 392 ZnF_C2H2: domain 9 of 30, from 465 to 489: score 18.4, E = 0.99 *->ykCpigCg.ksfssk.aLkrHmr.vH<-* y C + C+++ fss L+ H++++H mFLJ00107 465 YSCIY-CNkQLFSSLaVLQIHLKtMH 489 ZnF_C2H2: domain 10 of 30, from 497 to 520: score 21.2, E = 0.14 *->ykCpigCgksfssk.aLkrHmr.vH<-* + C++ C ++ +s +L++H+++vH mFLJ00107 497 HICQY-CLEVLPSLyNLNEHLKqVH 520 [output cut off at A = 10 top alignments] //