hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mfj/mfj24090/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mFLJ00107 ( 1371 res) mfj24090 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- zf-C2H2 Zinc finger, C2H2 type 395.7 4.6e-115 30 zf-C3HC4 Zinc finger, C3HC4 type (RING finger) 6.1 0.24 1 C1_4 TFIIH C1-like domain -7.8 0.14 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- zf-C2H2 1/30 107 130 .. 1 24 [] 10.8 9 zf-C2H2 2/30 178 200 .. 1 24 [] 31.2 2.4e-05 zf-C2H2 3/30 206 228 .. 1 24 [] 18.3 0.19 zf-C2H2 4/30 234 256 .. 1 24 [] 31.4 2.1e-05 zf-C2H2 5/30 262 284 .. 1 24 [] 23.9 0.0037 zf-C2H2 6/30 306 329 .. 1 24 [] 17.6 0.29 zf-C2H2 7/30 341 364 .. 1 24 [] 14.7 2.2 zf-C2H2 8/30 370 392 .. 1 24 [] 16.0 0.91 zf-C2H2 9/30 465 489 .. 1 24 [] 10.9 8.8 zf-C2H2 10/30 497 520 .. 1 24 [] 18.4 0.17 zf-C2H2 11/30 537 560 .. 1 24 [] 16.1 0.87 zf-C2H2 12/30 573 596 .. 1 24 [] 19.7 0.069 zf-C2H2 13/30 620 645 .. 1 24 [] 9.3 12 zf-C2H2 14/30 694 716 .. 1 24 [] 27.3 0.00035 zf-C2H2 15/30 724 746 .. 1 24 [] 25.8 0.00099 zf-C2H2 16/30 754 777 .. 1 24 [] 25.0 0.0018 zf-C2H2 17/30 782 805 .. 1 24 [] 19.1 0.1 zf-C2H2 18/30 812 835 .. 1 24 [] 20.7 0.034 zf-C2H2 19/30 843 865 .. 1 24 [] 17.1 0.43 zf-C2H2 20/30 869 892 .. 1 24 [] 15.2 1.5 zf-C2H2 21/30 946 969 .. 1 24 [] 21.4 0.021 zf-C2H2 22/30 990 1012 .. 1 24 [] 26.8 0.00049 zf-C2H2 23/30 1019 1041 .. 1 24 [] 25.9 0.00095 zf-C2H2 24/30 1048 1070 .. 1 24 [] 2.3 59 zf-C2H2 25/30 1080 1102 .. 1 24 [] 7.8 17 zf-C2H2 26/30 1198 1221 .. 1 24 [] 21.1 0.026 zf-C2H2 27/30 1255 1277 .. 1 24 [] 11.2 8.2 C1_4 1/1 1199 1292 .. 1 55 [] -7.8 0.14 zf-C2H2 28/30 1285 1307 .. 1 24 [] 19.8 0.067 zf-C3HC4 1/1 1287 1321 .. 1 50 [] 6.1 0.24 zf-C2H2 29/30 1316 1339 .. 1 24 [] 23.7 0.0043 zf-C2H2 30/30 1346 1369 .. 1 24 [] 20.1 0.051 Alignments of top-scoring domains: zf-C2H2: domain 1 of 30, from 107 to 130: score 10.8, E = 9 *->ykCpfdCgksFsrksnLkrHlrt.H<-* ++C+ C ++F + s+ + H+ ++ mFLJ00107 107 HSCD-SCLQVFESLSDITEHKIHqC 130 zf-C2H2: domain 2 of 30, from 178 to 200: score 31.2, E = 2.4e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ C+ksFsr s Lk+H ++H mFLJ00107 178 YPCQ-FCDKSFSRLSYLKHHEQSH 200 zf-C2H2: domain 3 of 30, from 206 to 228: score 18.3, E = 0.19 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +C + F++k + rH++ H mFLJ00107 206 FKCT-YCSRLFKHKRSRDRHIKLH 228 zf-C2H2: domain 4 of 30, from 234 to 256: score 31.4, E = 2.1e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +C+ +Fsr+++Lk Hl+tH mFLJ00107 234 YHCS-ECDAAFSRSDHLKIHLKTH 256 zf-C2H2: domain 5 of 30, from 262 to 284: score 23.9, E = 0.0037 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC +C + F ++s+L+ H+++H mFLJ00107 262 YKCA-VCRRGFLSSSSLHGHMQVH 284 zf-C2H2: domain 6 of 30, from 306 to 329: score 17.6, E = 0.29 *->ykCpfdCgksFsrksnLkrHlrt.H<-* kC+ +C + F +++L++H+ H mFLJ00107 306 QKCS-QCEEGFDFPEDLQKHIAEcH 329 zf-C2H2: domain 7 of 30, from 341 to 364: score 14.7, E = 2.2 *->ykCpfdCgksFsrksnLkrHlrt.H<-* +C +C++ F +L +H+ H mFLJ00107 341 LQCM-YCHELFVEETSLMNHIEQvH 364 zf-C2H2: domain 8 of 30, from 370 to 392: score 16.0, E = 0.91 *->ykCpfdCgksFsrksnLkrHlrtH<-* +C+ +C +sF + ++L +H+ +H mFLJ00107 370 NSCS-ICSESFLTVEELYSHMDSH 392 zf-C2H2: domain 9 of 30, from 465 to 489: score 10.9, E = 8.8 *->ykCpfdCg.ksFsrksnLkrHlrt.H<-* y+C +C+++ Fs+ + L+ Hl+t H mFLJ00107 465 YSCI-YCNkQLFSSLAVLQIHLKTmH 489 zf-C2H2: domain 10 of 30, from 497 to 520: score 18.4, E = 0.17 *->ykCpfdCgksFsrksnLkrHlrt.H<-* + C+ +C ++ + +nL+ Hl+ H mFLJ00107 497 HICQ-YCLEVLPSLYNLNEHLKQvH 520 zf-C2H2: domain 11 of 30, from 537 to 560: score 16.1, E = 0.87 *->ykCpfdCgksFsrksnLkrHlrt.H<-* y+C+ C ++ ++ +L+ H+r +H mFLJ00107 537 YQCN-FCSEVVNDLNTLQEHIRCsH 560 zf-C2H2: domain 12 of 30, from 573 to 596: score 19.7, E = 0.069 *->ykCpfdCgksFsrksnLkrHlrt.H<-* + Cp +C F + s+L+ H+r H mFLJ00107 573 FFCP-HCYMGFLTDSSLEEHIRQvH 596 zf-C2H2: domain 13 of 30, from 620 to 645: score 9.3, E = 12 *->ykCpfdCg..ksFsrksnLkrHlrt.H<-* y+C+ +C ++ F++ L++H++ +H mFLJ00107 620 YSCS-YCTnsPIFNSVLKLNKHIKEnH 645 zf-C2H2: domain 14 of 30, from 694 to 716: score 27.3, E = 0.00035 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cg ++++ +++++Hl+tH mFLJ00107 694 YICN-QCGAKYTSLDSFQTHLKTH 716 zf-C2H2: domain 15 of 30, from 724 to 746: score 25.8, E = 0.00099 *->ykCpfdCgksFsrksnLkrHlrtH<-* +Cp +C+k F ++++L +H +H mFLJ00107 724 LTCP-QCNKEFPNQESLLKHVTIH 746 zf-C2H2: domain 16 of 30, from 754 to 777: score 25.0, E = 0.0018 *->ykCpfdCgksFsrksnLkrHlrt.H<-* y C+ C+k F++ ++L++Hl H mFLJ00107 754 YICE-SCDKQFTSVDDLQKHLLDmH 777 zf-C2H2: domain 17 of 30, from 782 to 805: score 19.1, E = 0.1 *->ykCpfdCgksFsrksnLkrHlrt.H<-* ++C+ C+++F +k + + Hl ++H mFLJ00107 782 FRCT-LCQEVFDSKVSIQLHLAVkH 805 zf-C2H2: domain 18 of 30, from 812 to 835: score 20.7, E = 0.034 *->ykCpfdCgksFsrksnLkrHlrt.H<-* y+C+ C+ F++ +L+ H + +H mFLJ00107 812 YRCT-SCNWDFRNETDLQLHVKHnH 835 zf-C2H2: domain 19 of 30, from 843 to 865: score 17.1, E = 0.43 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC Cg+sF + +L+ H+ tH mFLJ00107 843 HKCI-FCGESFGTEVELQCHITTH 865 zf-C2H2: domain 20 of 30, from 869 to 892: score 15.2, E = 1.5 *->ykCpfdCgksFsrksnLkrHlrt.H<-* y C C k+F L++Hlr +H mFLJ00107 869 YNCR-FCSKAFHAVILLEKHLREkH 892 zf-C2H2: domain 21 of 30, from 946 to 969: score 21.4, E = 0.021 *->ykCpfdCgksFsrksnLkrHlrt.H<-* y C+ +Cg +++ L++H+ ++H mFLJ00107 946 YGCD-ICGAAYTMETLLQNHQLRdH 969 zf-C2H2: domain 22 of 30, from 990 to 1012: score 26.8, E = 0.00049 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +C ++F + L+ H++tH mFLJ00107 990 YKCN-VCSRTFFSENGLREHMQTH 1012 zf-C2H2: domain 23 of 30, from 1019 to 1041: score 25.9, E = 0.00095 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+Cp +Cg++F + +L+ H+ tH mFLJ00107 1019 YMCP-ICGERFPSLLTLTEHKVTH 1041 zf-C2H2: domain 24 of 30, from 1048 to 1070: score 2.3, E = 59 *->ykCpfdCgksFsrksnLkrHlrtH<-* C +C+ + +++ H ++H mFLJ00107 1048 GNCR-ICKMPLQSEEEFLEHCQMH 1070 zf-C2H2: domain 25 of 30, from 1080 to 1102: score 7.8, E = 17 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C +C ++ ++ +Lk H H mFLJ00107 1080 FRCV-VCMQTVTSTLELKIHGTFH 1102 zf-C2H2: domain 26 of 30, from 1198 to 1221: score 21.1, E = 0.026 *->ykCpfdCgksFsrksnLkrHlrt.H<-* +C+ C+ +F + s+L++H++t H mFLJ00107 1198 TRCS-SCNVKFESESELQNHIQTvH 1221 zf-C2H2: domain 27 of 30, from 1255 to 1277: score 11.2, E = 8.2 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +C+ +F + + + H H mFLJ00107 1255 YQCI-KCQMVFYNEWDIQVHVANH 1277 C1_4: domain 1 of 1, from 1199 to 1292: score -7.8, E = 0.14 *->nCyGCqkklpdginkksde............................ C++C+ k+++ +++ +++ ++ ++++ ++++ ++ ++ + mFLJ00107 1199 RCSSCNVKFESESELQNHIqtvhrelvpdanstqlktpqvspmpris 1245 ...sltSsvYrCpkCknvFCiDCDvFIH.......EsL.HnCPGCes<-* +++s + Y+C kC+ vF + D+ +H ++ +E L+H+C C + mFLJ00107 1246 psqSDEKKTYQCIKCQMVFYNEWDIQVHvanhmidEGLnHECKLCSQ 1292 zf-C2H2: domain 28 of 30, from 1285 to 1307: score 19.8, E = 0.067 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ C ++F +++ L+ Hl H mFLJ00107 1285 HECK-LCSQTFDSPAKLQCHLIEH 1307 zf-C3HC4: domain 1 of 1, from 1287 to 1321: score 6.1, E = 0.24 *->CrICleelkepsndfplilpCgHsGslkyfCrsClerwlss.sgntt C +C ++++ p l C H +e+ ++ +g+++ mFLJ00107 1287 CKLCSQTFDSPA-----KLQC-HL----------IEHSFEGmGGTFK 1317 CplC<-* Cp+C mFLJ00107 1318 CPVC 1321 zf-C2H2: domain 29 of 30, from 1316 to 1339: score 23.7, E = 0.0043 *->ykCpfdCgksFsrksnLkrHlrt.H<-* +kCp +C ++F + L++H+ + H mFLJ00107 1316 FKCP-VCFTVFVQANKLQQHIFSaH 1339 zf-C2H2: domain 30 of 30, from 1346 to 1369: score 20.1, E = 0.051 *->ykCpfdCgksFsrksnLkrHlrt.H<-* y C+ +C ++F + +L++H +t+H mFLJ00107 1346 YDCT-QCPQKFFFQTELQNHTMTqH 1369 //