hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mtk/mtk00130/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00102  ( 286 res)   mtk00130

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
AIG1      AIG1 family                                   285.1    8.8e-82   1
MMR_HSR1  GTPase of unknown function                     10.3    0.00076   1
Dynamin_N Dynamin family                                -46.1       0.62   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
Dynamin_N   1/1     107   214 ..     1   217 []   -46.1     0.62
MMR_HSR1    1/1     105   220 ..     1   140 []    10.3  0.00076
AIG1        1/1     105   286 .]     1   219 []   285.1  8.8e-82

Alignments of top-scoring domains:
Dynamin_N: domain 1 of 1, from 107 to 214: score -46.1, E = 0.62
                   *->IaVvGdqSsGKSSvLnaLlGrdfnLPhrgpgEptTrrplvTlqlges
                      +++vG   sGKS   n++lGr+ +    + +   ++rp+ T + ++ 
   mFLJ00102   107    LLLVGKTGSGKSATGNSILGRQ-A--FESKI---SARPV-TTTFQKG 146  

                   peaieivsipgavkveykdflhplkkfedfsevreeieketdriagknkg
                    +              + ++                              
   mFLJ00102   147 TR--------------EFEG------------------------------ 152  

                   isseGalakvsfgavkyCnfskpiileilsplvpgltLVDtPGldslSva
                                                    + l+ +DtP + +    
   mFLJ00102   153 ---------------------------------KELEVIDTPDIFA---- 165  

                   vgdqqPeDieeqIrelteeyiskpadiILaVvpAnvaLdlstssdealfl
                                 ++++  +s+  +++L+V          t+  e +  
   mFLJ00102   166 ---K----------KICDLLASPGPHAVLLVIQVGR-Y---TA--EDQAV 196  

                   arevdpkgerdktigVltKd<-*
                   ar +        ti   t++   
   mFLJ00102   197 ARCLQEIFGN--TILAYTIL    214  

MMR_HSR1: domain 1 of 1, from 105 to 220: score 10.3, E = 0.00076
                   *->lrvaivGrPNVGKSTLiNaLtgk..kraiVsdyPGtTrdpnegrvel
                      l+  +vG++ +GKS   N+++g++   +++s +P +T   + g+ e+
   mFLJ00102   105    LQLLLVGKTGSGKSATGNSILGRqaFESKISARP-VTTTFQKGTREF 150  

                   dgrqiilvDTPGiiegaskgegelgertleaieeaDlilfVvDaseglte
                   +g++++++DTP i  ++           l a    +++l+V+ + +  t 
   mFLJ00102   151 EGKELEVIDTPDIFAKK--------ICDLLASPGPHAVLLVIQVGR-YT- 190  

                   dytieeDleiadllydeerernleltLqelekkgkPvilvlNKiD<-*
                       +eD+ +a         r l+++     ++   +ilv++  +   
   mFLJ00102   191 ----AEDQAVA---------RCLQEIFGNTILAY--TILVFTRKE    220  

AIG1: domain 1 of 1, from 105 to 286: score 285.1, E = 8.8e-82
                   *->lrIvLVGkTGnGKSATGNSILGrkaFeSklraqgVTktCqkvsrvtw
                      l ++LVGkTG+GKSATGNSILGr+aFeSk++a++VT t+qk++r + 
   mFLJ00102   105    LQLLLVGKTGSGKSATGNSILGRQAFESKISARPVTTTFQKGTR-EF 150  

                   dGriinVIDTPGLFdlsvsaddiskEIirCllLaepGpHAvLLVDRlslg
                   +G++++VIDTP++F     a +i+       lLa pGpHAvLLV  +++g
   mFLJ00102   151 EGKELEVIDTPDIF-----AKKICD------LLASPGPHAVLLV--IQVG 187  

                   tRfTeEeekalrtlqelFGskIldymIvvFTrkDdLeddseTLeDYlsdg
                    R+T+E+++++r lqe+FG  Il y+I+vFTrk+dL+++s  Le+Y+ ++
   mFLJ00102   188 -RYTAEDQAVARCLQEIFGNTILAYTILVFTRKEDLAEGS--LEEYIQEN 234  

                   cPeaLkevlreCggRyvlFNNktadgeekeeQvqeLLalVeaivkengGk
                    +++L  +  +C++R++ FNNk a+g+e+e+Q+++L++ Ve i++en+G 
   mFLJ00102   235 NNKSLDVLDVACERRHCGFNNK-AQGDEQEAQLKKLMEEVELILWENEGH 283  

                   pytndlyeeikeeaekrlrekq<-*
                   +yt                      
   mFLJ00102   284 CYT-------------------    286  

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