hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mid/mid21013/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00101  ( 575 res)   mid21013

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
LRR_1    Leucine Rich Repeat                             29.6    7.3e-05   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
LRR_1      1/4     117   138 ..     1    25 []     3.5  5.2e+02
LRR_1      2/4     140   161 ..     1    25 []     7.3  1.2e+02
LRR_1      3/4     162   183 ..     1    25 []    12.8      8.2
LRR_1      4/4     184   205 ..     1    25 []    11.6       19

Alignments of top-scoring domains:
LRR_1: domain 1 of 4, from 117 to 138: score 3.5, E = 5.2e+02
                   *->nLeeLdLsgCNpslsgslppsl.glp<-*
                      nL  L L++ + +l gsl + l+      
   mFLJ00101   117    NLIQLKLNH-S-YL-GSLRD-LgTSL    138  

LRR_1: domain 2 of 4, from 140 to 161: score 7.3, E = 1.2e+02
                   *->nLeeLdLsgCNpslsgslppsl.glp<-*
                      +L++L L +C   l+ +l   ++++    
   mFLJ00101   140    HLQVLWLARC--GLT-DLDG-IgSFL    161  

LRR_1: domain 3 of 4, from 162 to 183: score 12.8, E = 8.2
                   *->nLeeLdLsgCNpslsgslppsl.glp<-*
                      +L+eL++s+ N ++s +l+p l  l    
   mFLJ00101   162    ELKELYVSY-N-NIS-DLSP-LcLLE    183  

LRR_1: domain 4 of 4, from 184 to 205: score 11.6, E = 19
                   *->nLeeLdLsgCNpslsgslppsl.glp<-*
                      +Le+LdL+g N +++ +l    + l+   
   mFLJ00101   184    QLEVLDLEG-N-NVE-DLGQ-MrYLQ    205  

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