hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj57291/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00095  ( 200 res)   mfj57291

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
DnaJ     DnaJ molecular chaperone homology domain       114.0    1.7e-29   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
DnaJ       1/1      16    74 ..     1    72 []   114.0  1.7e-29

Alignments of top-scoring domains:
DnaJ: domain 1 of 1, from 16 to 74: score 114.0, E = 1.7e-29
                   *->tdyYeiLGvskdAsddeIKKAYRkLAlkyHPDKnpgdpelseeklpe
                      + +Y +LG++k+A+ d+IKK+YRkLAlkyHPDKnp++pe        
   mFLJ00095    16    ESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPE-------- 54   

                   eekeeAeekFkeIneAYevLsDpek<-*
                        A++kFkeIn A+ +L+D +k   
   mFLJ00095    55 -----AADKFKEINNAHAILTDATK    74   

//