hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj58158/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00088  ( 904 res)   mfj58158

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N 
--------       -----------                              -----    ------- ---
Glyco_hydro_31 Glycosyl hydrolases family 31            802.8   1.2e-237   1

Parsed for domains:
Model          Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------       ------- ----- -----    ----- -----      -----  -------
Glyco_hydro_31   1/1     324   769 ..     1   591 []   802.8 1.2e-237

Alignments of top-scoring domains:
Glyco_hydro_31: domain 1 of 1, from 324 to 769: score 802.8, E = 1.2e-237
                   *->YffaygGptpkdvvkqYteLTGrPallpPyWalGfhqcRwgYtdkse
                      ++ +  Gptp+dv+kqY+ +TG++a +pP+++lG+hqcRw+Y  ++e
   mFLJ00088   324    FLLT--GPTPADVFKQYSYITGTQA-MPPLFSLGYHQCRWNY--EDE 365  

                   dedvrevvdgfreadIPlDviwlDidWhefdsfdYmdgyrdFTwdperFP
                   ++ v++v++gf+e+dIP+DviwlDi        ++++++++FTwd++rF 
   mFLJ00088   366 QD-VKAVDAGFDEHDIPYDVIWLDI--------EHTEDKKYFTWDKKRFA 406  

                   ddkpkemldeLhekGiklvviidPgisidkpdngeddeygvydegkekgk
                   +  pk m + L++k +klvvi dP+i   k d++    y vy  +ke  +
   mFLJ00088   407 N--PKRMQELLRSKKRKLVVISDPHI---KVDPD----YTVYAQAKE--Q 445  

                   dyFvKnadGsiyiGavWPDGpsafpDFtnpfdptparkWWadeiknlyde
                   + FvKn++G +++G +WP G s+++DFtnp +   +r+W+++ ++ +  +
   mFLJ00088   446 GFFVKNPEGGDFEGVCWP-GLSSYLDFTNP-K---VREWYSSLFA-FPVY 489  

                   lgsglGiDGiWiDMNEPsvwgFcGscgpntflpegaryyegFesNGqgtn
                    gs   i ++W+DMNEPsv  F      +                     
   mFLJ00088   490 QGS-TDILFLWNDMNEPSV--F------R--------------------- 509  

                   aepasdsawrvegtsnstldPdptkpenlyPYaInnqgrgdlg.ekTmpt
                                                             g+e Tm++
   mFLJ00088   510 ------------------------------------------GpELTMHK 517  

                   davHygggrktevrdhyfydggdpeevHNlYGllmakAtyealrkrsnrp
                   +avHyg+     + +h+        e+HN+YG+++ +At+e+l++rs ++
   mFLJ00088   518 SAVHYGD-----W-EHR--------ELHNIYGFYQQMATAEGLIQRS-KG 552  

                   lKnkRpFilSRSgfaGsQRYaahWtGDNtssWehLrySipmgLsfglsGi
                     ++RpF+lSRS+faGsQ+Y+a+WtGDN ++W++L++Sipm L+++ sGi
   mFLJ00088   553 --KERPFVLSRSFFAGSQKYGAVWTGDNKAEWSYLKISIPMLLTLSVSGI 600  

                   PfvGaDiGGFfGgnkdnenfhlgpteaELcvRWmQlGAFyPffRnHssng
                   +f+GaD+GGF G n         p++ EL+vRW+Q+GA++PffR H++++
   mFLJ00088   601 SFCGADVGGFIG-N---------PEA-ELLVRWYQAGAYQPFFRGHATMN 639  

                   tkrvqEPWlfgeetevaeiarkalrlRYrLLPYlYtlfyeAhetGlPvmR
                   tkr +EPWlfgee  +++ +r+a+r RY+LLPYlY+lfy+Ah++  PvmR
   mFLJ00088   640 TKR-REPWLFGEE--YTQLIREAIRQRYALLPYLYSLFYHAHVSSQPVMR 686  

                   PLflefPdDentydiddQfllGddLLVAPVleegatsrdvYLPreGvg.e
                   PL+ e+PdD +t++++d+++lG++LLV PV+++++ + dv LP    g++
   mFLJ00088   687 PLWVEYPDDLETFAVEDEYMLGSALLVHPVTDPQTATIDVFLP----GsD 732  

                   GgtWyDffdwtgevyeggteggggqtvtvdAPLdtiPvfvRgGsIi<-*
                   + +WyD    t    +g      g tv++++ LdtiPvf+RgGs++   
   mFLJ00088   733 E-VWYDS--KTFAYWKG------GCTVKIPVTLDTIPVFQRGGSVV    769  

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