hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/msh/msh08123/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00087  ( 1054 res)   msh08123

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RasGAP   GTPase-activator protein for Ras-like GTPase   285.7    3.6e-81   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
RasGAP     1/1     446   768 ..     1   390 []   285.7  3.6e-81

Alignments of top-scoring domains:
RasGAP: domain 1 of 1, from 446 to 768: score 285.7, E = 3.6e-81
                   *->lkqgelgslrlktvyttdfilpseaYeeLleLllesvdvepltasla
                      l      +lr +++ + +++lpse Y+eL e+l+++++       l+
   mFLJ00087   446    LGAPAGAVLRARIRVRCLRVLPSERYKELAEFLTFHYA------RLC 486  

                   saleevcsvldkdelAtkLvrlFlrrgrgkpfLraLidkEvertddpvnt
                    ale+++s   k+elA ++vr+++ +gr++ ++++L  +E++r+ +   +
   mFLJ00087   487 GALEPALSAQAKEELAAAMVRVLRATGRAQALVTDLGTAELARCGGREAL 536  

                   lFRgNsLatKsmevymklvGnqYLhttLkpvLkkiveekkescEvDPsKl
                   lFR+N+LatK++++ymklv+++YL++tL+ v++ ++++ +  cEvDPsK+
   mFLJ00087   537 LFRENTLATKAIDEYMKLVAQEYLQDTLGQVVRCLCASTE-DCEVDPSKC 585  

                   evndviSfgdpvegedletnlenLlqyverlfdaIinSsdrlPygLRdic
                               ++ +l +++++L++ +e++f+ Ii S++ +P +L +++
   mFLJ00087   586 ------------PTPELPKHQARLRDSCEEVFENIIHSYNCFPAELGSVF 623  

                   kqLrqaaekrFpsatqdvrykaVssFvFLRFfcPAIlSPklFnLvdehpd
                   +++r+a+ +r ++a      ++V  ++FLR++cPAIl P+lF+L +ehp 
   mFLJ00087   624 SSWREACKARGSEA---LGPRLVCASLFLRLLCPAILAPSLFGLAPEHPA 670  

                   pttrRtLtLiAKvlQnLANlsesksklfgsKEpwmeplfkndflkqhkdr
                   p  +RtLtLiAKv+QnLAN++      fg KE +m+++  n fl+ h  +
   mFLJ00087   671 PGPARTLTLIAKVIQNLANCAP-----FGEKEAYMAFM--NSFLEDHGPA 713  

                   vkdFLdelssvdepsesLvdkveelptkskPVstisgrelsllHslllen
                   + +FLd+ + vd        +++++                    +  + 
   mFLJ00087   714 MQHFLDQVATVD-------ADTTPSG-------------------YQGSG 737  

                   gdalkrkknnnrDHKAlgedpldkllfklryfrltthkltngk<-*
                    +al  +              +++l++ ++++++ t++  +     
   mFLJ00087   738 DLALQLAVL------------HVQLCTIFAELDQKTQDSLEPL    768  

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