hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/msh/msh08123/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00087  ( 1054 res)   msh08123

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RasGAP   GTPase-activator protein for Ras-like GTPase   103.7    3.7e-27   1
C2       C2 domain                                        6.7       0.34   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
C2         1/1     347   423 ..     1    88 []     6.7     0.34
RasGAP     1/1     518   690 ..     1   231 []   103.7  3.7e-27

Alignments of top-scoring domains:
C2: domain 1 of 1, from 347 to 423: score 6.7, E = 0.34
                   *->LrVtvieAknLppkDfkngksDPYVkvslggdkkdqkkkTkvikktl
                      L+V+v+eAk+Lp    ++  +   ++++l+g       +T    +  
   mFLJ00087   347    LTVWVHEAKGLPR---AT-VPGVRAELWLDGALL---ARTAPRAGPG 386  

                   NPvWNEtFtFevpppdlqetLeieVyDydrfgrddflGevs<-*
                      W E F+Fe ++p+  + L + +   +  g    +G+v+   
   mFLJ00087   387 QLFWAERFHFE-ALPPARR-LSLRLRSAGPAG--ATVGRVV    423  

RasGAP: domain 1 of 1, from 518 to 690: score 103.7, E = 3.7e-27
                   *->LvktllqkEIeSkaddpttlfRgNslaskmleqyfRrarGneYLrkt
                      Lv+ l + E+     +   lfR N+la+k++++y++++ ++eYL+ t
   mFLJ00087   518    LVTDLGTAELARCGGREALLFRENTLATKAIDEYMKLV-AQEYLQDT 563  

                   LrpvLkeIieskdWqHLscEiDPlkvykklVNqgelstsEldydlTnEev
                   L +v++   +s +     cE+DP+k                         
   mFLJ00087   564 LGQVVRCLCASTE----DCEVDPSK------------------------- 584  

                   ldeeekseaieenlrnLlkyteklleaItsSsdefPpeLryIckclrqsa
                        +   + + +++L++  e+++e I+ S + fP eL +++   r++ 
   mFLJ00087   585 ----CPTPELPKHQARLRDSCEEVFENIIHSYNCFPAELGSVFSSWREAC 630  

                   cekFPdnatVKEKKENKKSVVSqRFeqvilsavGgfvFLRFinPAIvsPd
                        ++                       ++v   +FLR+ +PAI++P 
   mFLJ00087   631 KARGSEA--------------------LGPRLVCASLFLRLLCPAILAPS 660  

                   lfnIidkspsaqaTTDqrRtLtliAKviQslANg<-*
                   lf++  + p +      +RtLtliAKviQ+lAN    
   mFLJ00087   661 LFGLAPEHPAPGP----ARTLTLIAKVIQNLANC    690  

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