hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpj/mpj03122/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00085  ( 479 res)   mpj03122

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Nop53    Nop53 (60S ribosomal biogenesis)               129.7    5.5e-35   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Nop53      1/1      36   447 ..     1   458 []   129.7  5.5e-35

Alignments of top-scoring domains:
Nop53: domain 1 of 1, from 36 to 447: score 129.7, E = 5.5e-35
                   *->SRKnKKAWRKNiDlt......DvEqgLeekrdeeitHGgvdiaekqd
                       R  K+ WR    l +++ + +v q+Le+ r +e+t Gg  +ae ++
   mFLJ00085    36    PRNKKRGWRR---LAeeplglEVDQFLEDVRLQERTTGGL-LAEAPN 78   

                   edLFvVDvsltgDkaivkK..liKkkkLNiKKpLKsdeILeniskvskve
                   e LF VD+  +  ++ +k++ + Kk +    KpL++d +Len sk++++ 
   mFLJ00085    79 EKLFFVDTGFKRKEPRKKRtlVQKKSQ-RLQKPLRVDLALENHSKIPAPK 127  

                   aklhpksstsnKkkiqglsKkrtraryleqkkldrLaarvalKKesklaa
                     l +      K    + +K+ +  +   q +l+r  + + +    +l  
   mFLJ00085   128 DILAHQVPNAKK----LRRKEELWEKLAKQGELPRDVRKAQA---RLLSP 170  

                   kvaKkg.....lVkatnfDvWgEvDleeeipKkkdekaeaseeldlvvkd
                   + +K+++++++ ++   +D+W     ++ ++ +++  + a+  ++  +k+
   mFLJ00085   171 PTPKAKpgpqdIIERPFYDLWN----PDNPLDTPLIGQDAF--FLEQTKK 214  

                   KiPktLlKqptSLwstatklPavLdiePlaVKdfeeiPhgGkSYNPasad
                   K     ++ p  L+ + +++Pav           e+iP +G+SYNP ++d
   mFLJ00085   215 KG----VRRPQRLHIKPSQVPAV-----------EVIP-AGASYNPTFED 248  

                   wqeLidkeykeEealIdkEaer..KrlTTSieskveelekerrrLmEmAE
                   +q+L+ +  + E+ + +kEae  +++l     +  e   + +  + Em E
   mFLJ00085   249 HQALLREAHEVELQR-EKEAEKleRQL---ALPTSEQAATQESVFREMCE 294  

                   GLRlkdkeEekgeeedEdveeeaelkedgdeepaeGaesdieltiNkpvk
                   GL l   ++e+  e+  +++ ea  +   + +p           + + ++
   mFLJ00085   295 GL-LEESDGEDEHEAGRAGQPEAG-DGTTEISPTG--------AAGPEKR 334  

                   NkrKTKyQKRnKaKrrkLDeeekrlleeKklkqqladlervkqIekeLde
                    ++KT +Q R+++K+ +  ++  ++  +++ + q  +l r+  I   ++ 
   mFLJ00085   335 MEKKTEQQ-RRREKAAR--KLRVQQAALRAARLQHQELFRLRGIKAQVAR 381  

                   kekqeasekkerkkkneeaKlLEEDDDVElKkkkLGTKhklpekdLEvkL
                     +++a   + r  + +  +          K+++LG + k   +d +v L
   mFLJ00085   382 RLAELARRREQRRIRRLAEAD---------KPRRLG-RLKYQAPDIDVQL 421  

                   pDELtgSLReLKPEGnLLkDRyrsLQ<-*
                   + EL+gSLR LKPEG+ L DR++s Q   
   mFLJ00085   422 SSELSGSLRTLKPEGHILRDRFKSFQ    447  

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