hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mkg/mkg00207/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00080  ( 882 res)   mkg00207

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Rhomboid Rhomboid family                                147.2    2.9e-40   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Rhomboid   1/1     675   818 ..     1   172 []   147.2  2.9e-40

Alignments of top-scoring domains:
Rhomboid: domain 1 of 1, from 675 to 818: score 147.2, E = 2.9e-40
                   *->vqpgqlWRpeliTsmFlHasGflHLlfNmlaLlffGiplErilGslr
                       +p q++R  +++s+FlHa G+ H l  +++++ + ++lE+  G++r
   mFLJ00080   675    EVPDQFYR--IWLSLFLHA-GIVHCLVSVVFQMTILRDLEKLAGWHR 718  

                   flllYllsGlaggVlsllsylfspassapsvGASGAifGllgallvllpr
                   + ++++lsG++g   +l+s++f p++  + vG  G  fGll++l+v+l++
   mFLJ00080   719 ISIIFILSGITG---NLASAIFLPYR--AEVGPAGSQFGLLACLFVELFQ 763  

                   nrilllfipgallllllvillnllfgfsllpgisnfagglaggavedggg
                   +++ll ++++a++ l +++l+ ++ g+  lp+i+n a             
   mFLJ00080   764 SWQLLERPWKAFFNLSAIVLFLFICGL--LPWIDNIA------------- 798  

                   vawaAHlgGfiaGlllgfillrrpr<-*
                        H++Gf++G+ll+f +l+++    
   mFLJ00080   799 -----HIFGFLSGMLLAFAFLPYIT    818  

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