hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mbg/mbg01449/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mFLJ00070 ( 1167 res) mbg01449 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- EGF_CA Calcium-binding EGF-like domain 498.4 3.3e-145 14 EGF Epidermal growth factor-like domain. 258.4 5.7e-73 14 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- EGF 1/14 23 52 .. 1 32 [] 25.2 0.0088 EGF_CA 1/14 24 52 .. 1 34 [] -2.6 3.5 EGF_CA 2/14 266 306 .. 1 34 [] 42.4 6e-08 EGF 2/14 269 306 .. 1 32 [] 34.2 1.8e-05 EGF 3/14 488 526 .. 1 32 [] 27.5 0.0019 EGF_CA 3/14 485 526 .. 1 34 [] 34.8 1.2e-05 EGF_CA 4/14 527 570 .. 1 34 [] 46.4 3.8e-09 EGF 4/14 530 570 .. 1 32 [] 29.2 0.00057 EGF_CA 5/14 571 613 .. 1 34 [] 50.3 2.6e-10 EGF 5/14 574 613 .. 1 32 [] 31.5 0.00012 EGF 6/14 617 654 .. 1 32 [] 19.7 0.42 EGF_CA 6/14 614 654 .. 1 34 [] 48.9 6.6e-10 EGF_CA 7/14 655 695 .. 1 34 [] 57.1 2.3e-12 EGF 7/14 658 695 .. 1 32 [] 25.3 0.0083 EGF 8/14 699 736 .. 1 32 [] 33.4 3e-05 EGF_CA 8/14 696 736 .. 1 34 [] 56.9 2.6e-12 EGF 9/14 740 776 .. 1 32 [] 27.6 0.0017 EGF_CA 9/14 737 776 .. 1 34 [] 49.5 4.3e-10 EGF 10/14 780 819 .. 1 32 [] 30.2 0.00028 EGF_CA 10/14 777 819 .. 1 34 [] 52.8 4.5e-11 EGF 11/14 907 946 .. 1 32 [] 22.9 0.046 EGF_CA 11/14 904 946 .. 1 34 [] 42.4 5.9e-08 EGF_CA 12/14 947 987 .. 1 34 [] 42.9 4.3e-08 EGF 12/14 950 987 .. 1 32 [] 18.4 1 EGF 13/14 1084 1117 .. 1 32 [] 12.4 21 EGF_CA 13/14 1081 1117 .. 1 34 [] 27.5 0.00066 EGF 14/14 1121 1162 .. 1 32 [] 24.7 0.013 EGF_CA 14/14 1118 1162 .. 1 34 [] 50.6 2e-10 Alignments of top-scoring domains: EGF: domain 1 of 14, from 23 to 52: score 25.2, E = 0.0088 *->eCa.pCsnGgtEqnGtCi.sytC.CpgpGytg.rCe<-* C pC nG G+C + +C Cp p +tg+ C+ mFLJ00070 23 VCPlPCMNG-----GQCSsRNQClCP-PDFTGrFCQ 52 EGF_CA: domain 1 of 14, from 24 to 52: score -2.6, E = 3.5 *->DiDEC..pCqnGGptgtCiN.vGSYrC.CppGyt.rnCe<-* C+ pC nGG +C + +C Cpp +t+r C+ mFLJ00070 24 ----CplPCMNGG---QCSSrN---QClCPPDFTgRFCQ 52 EGF_CA: domain 2 of 14, from 266 to 306: score 42.4, E = 6e-08 *->DiDEC....pCqnGGptgtCiN.vGSYrC.CppGyt.....rnCe<- +EC ++ C++G C N++GSYrC CppG++ ++++++C+ mFLJ00070 266 GMNECampgMCRHG----DCLNnPGSYRCvCPPGHSlgpsrTQCI 306 * mFLJ00070 - - EGF: domain 2 of 14, from 269 to 306: score 34.2, E = 1.8e-05 *->eCa...pCsnGgtEqnGtCi....sytC.CpgpGytg.....rCe<- eCa ++ C +G C+++++sy+C Cp pG ++++++++C+ mFLJ00070 269 ECAmpgMCRHG------DCLnnpgSYRCvCP-PGHSLgpsrtQCI 306 * mFLJ00070 - - EGF: domain 3 of 14, from 488 to 526: score 27.5, E = 0.0019 *->eCa....pCsnGgtEqnGtCi....sytC.CpgpGytg.....rCe< eC +++ C++G +C+++++ y+C+C +Gy+ ++++++C+ mFLJ00070 488 ECRlnqnICGHG------QCVpgpsDYSChCN-AGYRShpqhrYCV 526 -* mFLJ00070 - - EGF_CA: domain 3 of 14, from 485 to 526: score 34.8, E = 1.2e-05 *->DiDEC.....pCqnGGptgtCiN.vGSYrC.CppGyt.....rnCe< DEC+ ++++C++G +C+ ++ Y+C+C +Gy++++++r C+ mFLJ00070 485 ETDECrlnqnICGHG----QCVPgPSDYSChCNAGYRshpqhRYCV 526 -* mFLJ00070 - - EGF_CA: domain 4 of 14, from 527 to 570: score 46.4, E = 3.8e-09 *->DiDEC...pCqnGGptgtCiN.vGSYrC.CppGyt.......rnCe< D++EC+ +pC++G g+C N+ GSY C+C Gy+ + + ++r+C+ mFLJ00070 527 DVNECeaePCGPGK--GICMNtGGSYNChCNRGYRlhvgaggRSCV 570 -* mFLJ00070 - - EGF: domain 4 of 14, from 530 to 570: score 29.2, E = 0.00057 *->eCa..pCsnGgtEqnGtCi....sytC.CpgpGytg.......rCe< eC+ +pC++G G+C ++++sy C+C Gy+++ + ++++C+ mFLJ00070 530 ECEaePCGPGK----GICMntggSYNChCN-RGYRLhvgaggrSCV 570 -* mFLJ00070 - - EGF_CA: domain 5 of 14, from 571 to 613: score 50.3, E = 2.6e-10 *->DiDEC....pCqnGGptgtCiN.vGSYrC.CppGyt......rnCe< D +EC ++++C+ GG CiN +G Y+C+C pGy+ + ++++ Ce mFLJ00070 571 DLNECakphLCGDGG---FCINfPGHYKCnCYPGYRlkasrpPICE 613 -* mFLJ00070 - - EGF: domain 5 of 14, from 574 to 613: score 31.5, E = 0.00012 *->eCa...pCsnGgtEqnGtCi....sytC.CpgpGytg......rCe< eCa+++ C+ G G Ci+ ++ y+C+C pGy+++ ++++ Ce mFLJ00070 574 ECAkphLCGDG-----GFCInfpgHYKCnCY-PGYRLkasrppICE 613 -* mFLJ00070 - - [output cut off at A = 10 top alignments] //