hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbg/mbg01449/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mFLJ00070 ( 1167 res) mbg01449 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- EGF_CA Calcium binding EGF domain 352.5 4.7e-102 12 TB TB domain 149.7 5e-41 4 EGF EGF-like domain 142.6 6.8e-39 14 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- EGF 1/14 24 51 .. 1 39 [] 28.6 0.00014 TB 1/4 198 241 .. 1 45 [] 15.6 0.0033 EGF 2/14 270 305 .. 1 39 [] 17.3 0.37 EGF_CA 1/12 268 305 .. 1 55 [] 39.4 8.2e-08 TB 2/4 324 365 .. 1 45 [] 71.0 2.4e-17 EGF 3/14 489 525 .. 1 39 [] 19.5 0.08 EGF_CA 2/12 486 525 .. 1 55 [] -4.6 2.1 EGF 4/14 531 569 .. 1 39 [] 11.5 1.4 EGF_CA 3/12 527 569 .. 1 55 [] 48.0 2.1e-10 EGF_CA 4/12 571 603 .. 1 55 [] 27.8 0.00025 EGF 5/14 575 612 .. 1 39 [] 13.6 0.87 EGF_CA 5/12 614 653 .. 1 55 [] 52.5 9.6e-12 EGF 6/14 618 653 .. 1 39 [] -0.9 23 EGF_CA 6/12 655 694 .. 1 55 [] 49.5 7.4e-11 EGF 7/14 659 694 .. 1 39 [] 24.5 0.0025 EGF 8/14 700 735 .. 1 39 [] 31.4 2.1e-05 EGF_CA 7/12 696 735 .. 1 55 [] 51.1 2.4e-11 EGF 9/14 741 775 .. 1 39 [] 17.8 0.26 EGF_CA 8/12 737 775 .. 1 55 [] 42.5 9.6e-09 EGF 10/14 781 818 .. 1 39 [] 26.4 0.00066 EGF_CA 9/12 777 818 .. 1 55 [] 30.9 2.9e-05 TB 3/4 838 881 .. 1 45 [] 59.6 6.7e-14 EGF 11/14 908 945 .. 1 39 [] 14.7 0.69 EGF_CA 10/12 904 945 .. 1 55 [] 29.4 8.5e-05 EGF_CA 11/12 947 986 .. 1 55 [] 34.2 3e-06 EGF 12/14 951 986 .. 1 39 [] 22.6 0.0092 TB 4/4 1010 1055 .. 1 45 [] 26.9 9.5e-05 EGF 13/14 1087 1116 .. 1 39 [] 12.6 1.1 EGF_CA 12/12 1118 1161 .. 1 55 [] 37.5 3.1e-07 EGF 14/14 1132 1161 .. 1 39 [] 4.6 6.6 Alignments of top-scoring domains: EGF: domain 1 of 14, from 24 to 51: score 28.6, E = 0.00014 *->CspnngpCsngGtCvdtpggytCeCppGdyfllytGkrC<-* C+ pC+ngG+C + +C Cpp +tG++C mFLJ00070 24 CPL---PCMNGGQCSSRN---QCLCPPD-----FTGRFC 51 TB: domain 1 of 4, from 198 to 241: score 15.6, E = 0.0033 *->grC.snplpgravTKse.CCCsvGrgeAWGtp.CElCPvpgtaefke + C+snplpg +TK+e+CC s G+ AWG +C +CP + + ++ mFLJ00070 198 QPCgSNPLPG--LTKQEdCCGSIGT--AWGQSkCHKCPQLQYTGVQK 240 L<-* mFLJ00070 241 P 241 EGF: domain 2 of 14, from 270 to 305: score 17.3, E = 0.37 *->CspnngpCsngGtCvdtpggytCeCppGdyfllytGkrC<-* C+ C + G C++ pg+y+C CppG + l+ + +C mFLJ00070 270 CAMPG-MCRH-GDCLNNPGSYRCVCPPG-HSLGPSRTQC 305 EGF_CA: domain 1 of 12, from 268 to 305: score 39.4, E = 8.2e-08 *->DvDECatgtlhvCpDpdentvCvNtiGSFeCvarkdCpeGYeVpvse +ECa ++ +C + ++C+N+ GS++Cv Cp+G + mFLJ00070 268 --NECAMPG--MC----RHGDCLNNPGSYRCV----CPPGHS----- 297 nnedgtnC<-* ++ +t+C mFLJ00070 298 LGPSRTQC 305 TB: domain 2 of 4, from 324 to 365: score 71.0, E = 2.4e-17 *->grCsnplpgravTKseCCCsvGrgeAWGtpCElCPvpgtaefkeL<- +C++pl r +T++ CCCsvG+ AWG C+ CP++gta+fke+ mFLJ00070 324 HQCQHPLTTR-LTRQLCCCSVGK--AWGARCQRCPADGTAAFKEI 365 * mFLJ00070 - - EGF: domain 3 of 14, from 489 to 525: score 19.5, E = 0.08 *->CspnngpCsngGtCvdtpggytCeCppGdyfllytGkrC<-* C n + C + G+Cv++p++y+C+C G y+ + + ++C mFLJ00070 489 CRLNQNICGH-GQCVPGPSDYSCHCNAG-YRSHPQHRYC 525 EGF_CA: domain 2 of 12, from 486 to 525: score -4.6, E = 2.1 *->DvDECatgtlhvCpDpdentvCvNtiGSFeCvarkdCpeGYeVpvse DEC+ + ++C+ ++Cv ++C C +GY+ mFLJ00070 486 -TDECRLNQ-NICG----HGQCVPGPSDYSCH----CNAGYR----- 517 nnedgtnC<-* + C mFLJ00070 518 SHPQHRYC 525 EGF: domain 4 of 14, from 531 to 569: score 11.5, E = 1.4 *->CspnngpCsng.GtCvdtpggytCeCppGdyfll..ytGkrC<-* C + pC g+G+C++t+g+y C+C G y+l+ + G+ C mFLJ00070 531 CEAE--PCGPGkGICMNTGGSYNCHCNRG-YRLHvgAGGRSC 569 EGF_CA: domain 3 of 12, from 527 to 569: score 48.0, E = 2.1e-10 *->DvDECatgtlhvCpDpdentvCvNtiGSFeCvarkdCpeGYeVpvse Dv+EC+ + C+ + +++C Nt GS++C C +GY+ mFLJ00070 527 DVNECEAEP---CG--PGKGICMNTGGSYNCH----CNRGYR---LH 561 nnedgtnC<-* ++++g C mFLJ00070 562 VGAGGRSC 569 EGF_CA: domain 4 of 12, from 571 to 603: score 27.8, E = 0.00025 *->DvDECatgtlhvCpDpdentvCvNtiGSFeCvarkdCpeGYeVpvse D++ECa + h C +++ C+N+ G ++C C +GY+ mFLJ00070 571 DLNECAK-P-HLC---GDGGFCINFPGHYKCN----CYPGYR----- 603 nnedgtnC<-* mFLJ00070 - -------- - EGF: domain 5 of 14, from 575 to 612: score 13.6, E = 0.87 *->CspnngpCsngGtCvdtpggytCeCppGdyfllyt.GkrC<-* C++ + C gG+C++ pg+y+C C pG y+l ++ + C mFLJ00070 575 CAKPH-LCGDGGFCINFPGHYKCNCYPG-YRLKASrPPIC 612 EGF_CA: domain 5 of 12, from 614 to 653: score 52.5, E = 9.6e-12 *->DvDECatgtlhvCpDpdentvCvNtiGSFeCvarkdCpeGYeVpvse D+DEC+++ Cp +++C+N+ GSF+C+ +C +GY+ mFLJ00070 614 DIDECRDPS--TCP----DGKCENKPGSFKCI---ACQPGYR----- 646 nnedgtnC<-* +g++C mFLJ00070 647 -SQGGGAC 653 EGF: domain 6 of 14, from 618 to 653: score -0.9, E = 23 *->CspnngpCsngGtCvdtpggytCe.CppGdyfllytGkrC<-* C + C G+C + pg+++C+ C+pG + + G C mFLJ00070 618 CRDPS-TCPD-GKCENKPGSFKCIaCQPG--YRSQGGGAC 653 EGF_CA: domain 6 of 12, from 655 to 694: score 49.5, E = 7.4e-11 *->DvDECatgtlhvCpDpdentvCvNtiGSFeCvarkdCpeGYeVpvse Dv+EC +gt C ++C+N GS++C+ C +GYe mFLJ00070 655 DVNECSEGT--PC----SPGWCENLPGSYRCT----CAQGYE----- 686 nnedgtnC<-* + dg C mFLJ00070 687 PAQDGLSC 694 EGF: domain 7 of 14, from 659 to 694: score 24.5, E = 0.0025 *->CspnngpCsngGtCvdtpggytCeCppGdyfllytGkrC<-* Cs+ + pCs G C ++pg+y+C C++G y + +G C mFLJ00070 659 CSEGT-PCSP-GWCENLPGSYRCTCAQG-YEPAQDGLSC 694 EGF: domain 8 of 14, from 700 to 735: score 31.4, E = 2.1e-05 *->CspnngpCsngGtCvdtpggytCeCppGdyfllytGkrC<-* C + C+ G+C++tpg+++C+C G y+l+ + rC mFLJ00070 700 CEAGK-VCQD-GICTNTPGSFQCQCLSG-YHLSRDRSRC 735 EGF_CA: domain 7 of 12, from 696 to 735: score 51.1, E = 2.4e-11 *->DvDECatgtlhvCpDpdentvCvNtiGSFeCvarkdCpeGYeVpvse DvDEC+ g+ vC ++++C+Nt GSF+C+ C +GY mFLJ00070 696 DVDECEAGK--VC----QDGICTNTPGSFQCQ----CLSGYH----- 727 nnedgtnC<-* d+ C mFLJ00070 728 LSRDRSRC 735 EGF: domain 9 of 14, from 741 to 775: score 17.8, E = 0.26 *->CspnngpCsngGtCvdtpggytCeCppGdyfllytGkrC<-* C+ C + G C++t g+y+C Cp+G + l G++C mFLJ00070 741 CDFPA-ACIG-GDCINTNGSYRCLCPQG--HRLVGGRKC 775 EGF_CA: domain 8 of 12, from 737 to 775: score 42.5, E = 9.6e-09 *->DvDECatgtlhvCpDpdentvCvNtiGSFeCvarkdCpeGYeVpvse D+DEC++++ C +++C+Nt GS++C+ Cp+G + mFLJ00070 737 DIDECDFPA--AC----IGGDCINTNGSYRCL----CPQGHR----- 768 nnedgtnC<-* +g +C mFLJ00070 769 -LVGGRKC 775 EGF: domain 10 of 14, from 781 to 818: score 26.4, E = 0.00066 *->CspnngpCsngGtCvdtpggytCeCppGdyfllytGkrC<-* Cs+++g C+ +G C +++g+y C C++G + l +++ C mFLJ00070 781 CSQDPGLCLPHGACENLQGSYVCVCDEG-FTLTQDQHGC 818 EGF_CA: domain 9 of 12, from 777 to 818: score 30.9, E = 2.9e-05 *->DvDECat.gtlhvCpDpdentvCvNtiGSFeCvarkdCpeGYeVpvs D+DEC ++++ C + C+N +GS+ Cv C+eG++ mFLJ00070 777 DIDECSQdPG--LC---LPHGACENLQGSYVCV----CDEGFT---- 810 ennedgtnC<-* d + C mFLJ00070 811 -LTQDQHGC 818 TB: domain 3 of 4, from 838 to 881: score 59.6, E = 6.7e-14 *->grCsnplpgravTKseCCCsvGrgeAWGtpCE..lCPvpgtaefkeL C+ l+ + vT +eCCCs+G+ +WG++CE +CPv +aef+ L mFLJ00070 838 VFCDSVLATN-VTQQECCCSLGA--GWGDHCEiyPCPVYSSAEFHSL 881 <-* mFLJ00070 - - EGF: domain 11 of 14, from 908 to 945: score 14.7, E = 0.69 *->Cspnn.gpCsngGtCvdtpggytCeCppGdyfllytGkrC<-* C C+ G+Cv+t+ gy+C C++G ++++++ C mFLJ00070 908 CILFGaEICKE-GKCVNTQPGYECYCKQG-FYYDGNLLEC 945 EGF_CA: domain 10 of 12, from 904 to 945: score 29.4, E = 8.5e-05 *->DvDECat.gtlhvCpDpdentvCvNtiGSFeCvarkdCpeGYeVpvs D+DEC+ g+ ++C + ++CvNt+ ++eC C++G+ mFLJ00070 904 DIDECILfGA-EIC----KEGKCVNTQPGYECY----CKQGFY---- 937 ennedgtnC<-* ++ +C mFLJ00070 938 -YDGNLLEC 945 EGF_CA: domain 11 of 12, from 947 to 986: score 34.2, E = 3e-06 *->DvDECatgtlhvCpDpdentvCvNtiGSFeCvarkdC..peGYeVpv DvDEC + +C +n+vC+Nt G+++C C++p+ Y+ mFLJ00070 947 DVDECLDES--NC----RNGVCENTRGGYRCA----CtpPAEYS--- 980 sennedgtnC<-* + +C mFLJ00070 981 ----PAQRQC 986 EGF: domain 12 of 14, from 951 to 986: score 22.6, E = 0.0092 *->CspnngpCsngGtCvdtpggytCeCppGdyfllytGkrC<-* C ++ +C n G C +t+ggy+C C+p+ ++ ++++C mFLJ00070 951 CLDES-NCRN-GVCENTRGGYRCACTPP-AEYSPAQRQC 986 TB: domain 4 of 4, from 1010 to 1055: score 26.9, E = 9.5e-05 *->grCsnplpgravTKseCCCsvGrgeAWGtpCElCPvpgt...aefke g+C++pl+g a+T + CCC Gr +WGt+C +CP++gt++++ + mFLJ00070 1010 GMCMGPLAGPALTFDDCCCRQGR--GWGTQCRPCPPRGTgsqCPTSQ 1054 L<-* mFLJ00070 1055 S 1055 EGF: domain 13 of 14, from 1087 to 1116: score 12.6, E = 1.1 *->CspnngpCsngGtCvdtpggytCeCppGdyfllytGkrC<-* C + G+Cv+ pgg CeCp G ++l+ + rC mFLJ00070 1087 CVS--------GRCVPRPGGAVCECPGG-FQLDASRARC 1116 EGF_CA: domain 12 of 12, from 1118 to 1161: score 37.5, E = 3.1e-07 *->DvDECatgtlh...vCpDpdentvCvNtiGSFeCvarkdCpeGYeVp D+DEC++ ++ C +++ CvNt GSF+Cv C++G++ mFLJ00070 1118 DIDECRELN-QrglLC----KSERCVNTSGSFRCV----CKAGFT-- 1153 vsennedgtnC<-* + ++C mFLJ00070 1154 ---RSRPHGAC 1161 EGF: domain 14 of 14, from 1132 to 1161: score 4.6, E = 6.6 *->CspnngpCsngGtCvdtpggytCeCppGdyfllytGkrC<-* C ++ +Cv+t g+++C C+ G + + C mFLJ00070 1132 CKSE--------RCVNTSGSFRCVCKAG-FTRSRPHGAC 1161 //