hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mph/mph01671/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mFLJ00069  ( 968 res)   mph01671

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
AAA      ATPases associated with a variety of cellula    51.8    8.7e-11   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
AAA        1/1     360   517 ..     1    92 []    51.8  8.7e-11

Alignments of top-scoring domains:
AAA: domain 1 of 1, from 360 to 517: score 51.8, E = 8.7e-11
                   *->pgevvllvGppGsGKTTlaralarllgpgviyidge...ggqrirla
                      + +v ll+GppG GKTTla+ +ar++g  v++ +++++++ + +r +
   mFLJ00069   360    RQKVALLCGPPGLGKTTLAHVVARHAGYCVVEMNASddrSPEAFRTR 406  

                   lalark...........dvlllDEitslld....................
                   ++ a +  +  + ++++ +l++DEi+ +     + +++ +++++ ++ ++
   mFLJ00069   407 IEAATQmesvlgvggrpNCLVIDEIDGAPTaainvllgilnrkgpqeadq 456  

                   ....................vtviattn.........dldpallrr...r
                   ++     ++++++ +++++ +++i+++n++ +++ ++ ++ all + +++
   mFLJ00069   457 ggtavaaggrrrraegglltRPIICICNdqftpslrqLKQQALLLHvppT 506  

                   fdrrivllril<-*
                   +  r+v ++ +   
   mFLJ00069   507 LPSRLVQRLQE    517  

//