hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mph/mph01671/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00069  ( 968 res)   mph01671

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
AAA      ATPase family associated with various cellul    32.3    1.1e-05   1
AAA_5    ATPase family associated with various cellul    13.5     0.0021   1
AAA_2    ATPase family associated with various cellul   -47.0        0.2   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
AAA_5      1/1     364   506 ..     1   184 []    13.5   0.0021
AAA_2      1/1     360   514 ..     1   197 []   -47.0      0.2
AAA        1/1     363   561 ..     1   216 []    32.3  1.1e-05

Alignments of top-scoring domains:
AAA_5: domain 1 of 1, from 364 to 506: score 13.5, E = 0.0021
                   *->pvlLvGppGtGKtelaerLaaalsgqggrpvfyvqltrdtteedllg
                        lL GppG GKt+la  +a++     g+ v++++ ++d ++e +  
   mFLJ00069   364    A-LLCGPPGLGKTTLAHVVARHA----GYCVVEMNASDDRSPEAFRT 405  

                   rrniaplleGngttswvdgpLvrAaryaretegslpeghilvlDEinras
                   r++ a ++          ++L   +r           +  lv+DEi+ a+
   mFLJ00069   406 RIEAATQM---------ESVLGVGGR-----------PNCLVIDEIDGAP 435  

                   pevlnvLlslLderrlllpdggelvkvppydklaerg.reeldlwklgrl
                    +++nvLl++L+ +  +  d g+   ++    +++r ++  l+       
   mFLJ00069   436 TAAINVLLGILNRKGPQEADQGGTAVAAG--GRRRRAeGGLLT------- 476  

                   ihdfrlIatsNpldgprglnelsaALrrRFlfvtvdpp<-*
                      + +I  +N++       + +  L++  l+ +v+p    
   mFLJ00069   477 ---RPIICICNDQF-----TPSLRQLKQQALLLHVPPT    506  

AAA_2: domain 1 of 1, from 360 to 514: score -47.0, E = 0.2
                   *->rpigsflflGPTGVGKTefdimppGLakaLAelLfv..........g
                      r++ + l++GP G GKT        La  +A+       + + ++++
   mFLJ00069   360    RQK-VALLCGPPGLGKTT-------LAHVVARHAGYcvvemnasddR 398  

                   dekal.iriDMsEymEAGYVgEevkhsVsrLiGappGYVgyEegGqLTEa
                   + +a+++ri++ + mE          sV    G p   V           
   mFLJ00069   399 SPEAFrTRIEAATQME----------SVLGVGGRPNCLV----------- 427  

                   VRRkPYSVVLlDEIEKAhpkgsigrDVSrEdVqniLLQvlD.........
                             +DEI+ A                n+LL +l ++++++ ++
   mFLJ00069   428 ----------IDEIDGAPT-----------AAINVLLGILNrkgpqeadq 456  

                   gGrLtVPpqGGRKHdsqGrtVdFrNtliImTsNfgsekisdardyelkel
                   gG++     GGR+  ++G    +r ++ I+  N +    ++       +l
   mFLJ00069   457 GGTAV--AAGGRRRRAEG-GLLTRPIICIC--NDQFTPSLR-------QL 494  

                   vmdelkkgFiPEFlnRldei<-*
                    +++l  +  P +  Rl  +   
   mFLJ00069   495 KQQALLLHVPPTLPSRLVQR    514  

AAA: domain 1 of 1, from 363 to 561: score 32.3, E = 1.1e-05
                   *->gvLLyGPPGtGKTlLAkavAnelgvpfisisgselvskyvGesekrv
                        LL+GPPG GKT+LA+ vA+++g+ ++++++s++ s   +  ++r+
   mFLJ00069   363    VALLCGPPGLGKTTLAHVVARHAGYCVVEMNASDDRSP--EAFRTRI 407  

                   ralfelArkslkkaaPspiiFIDEiDalapkRgdegdvssrvvnqLLtem
                    a  ++ +     + P   + IDEiD   ++          ++n+LL  +
   mFLJ00069   408 EAATQMESVLGVGGRPN-CLVIDEIDGAPTA----------AINVLLGIL 446  

                   DL.e....................rigfekhylrgsdvvDlsnvlviaaT
                   + +++++ +++++    ++++++ + g+ +              ++i+ +
   mFLJ00069   447 NRkGpqeadqggtavaaggrrrraEGGLLT-------------RPIICIC 483  

                   NrpdlldpaLlrpGRfdreievplP......deeerleIlkihlkkmpla
                   N     +p L+      + + + +P++ +++ ++ ++eI   h  +   +
   mFLJ00069   484 NDQF--TPSLRQ--LKQQALLLHVPptlpsrLVQRLQEISLQHGMRSDPG 529  

                   lcqelselakdvdleelaeelArrtpgfsgadlaa..lcreAalralr<-
                              v l e       +t++   a ++  + +   + r+l   
   mFLJ00069   530 ---------ALVALCE-------KTDNDIRACINTlqFLYGRGRRELS   561  

                   *
                    
   mFLJ00069     -   -    

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