hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg21780/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00068  ( 1002 res)   mbg21780

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RhoGEF   Guanine nucleotide exchange factor for Rho/R   103.3    2.8e-26   1
PH       Pleckstrin homology domain.                     28.3      0.001   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
RhoGEF     1/1     589   761 ..     1   211 []   103.3  2.8e-26
PH         1/1     775   882 ..     1    82 []    28.3    0.001

Alignments of top-scoring domains:
RhoGEF: domain 1 of 1, from 589 to 761: score 103.3, E = 2.8e-26
                   *->vlkELlqTErnYVrdLkilvevflkpLkkeakssllpllspdevktl
                      vl E+++TEr+YVr L + ++++  +L++++    +p   + +  +l
   mFLJ00068   589    VLAEMVATEREYVRALDYTIQNYFPELDRPD----VPQGLRGQRAHL 631  

                   FgpNieeiyefHrrFLd.eLeerveewllskdlKsernsviedsgerigd
                   Fg N+e + +fH +F+++eLe++                    +++r+++
   mFLJ00068   632 FG-NLEKLRDFHYNFFLrELEACT------------------RHPPRVAH 662  

                   vFlklfsaeeffkiYseYcsnhpdalellkkLmkkkknpaFqkflkeies
                    Fl +   ++  + Y+ Y +n+p++ +l +         +F++  + +  
   mFLJ00068   663 AFLRH--VSSIGHHYALYSKNKPRSDALMTN----YGHTFFKEKQQALGD 706  

                   kpncrsksearltLeslLikPvQRltkYpLLLkellkhtppdhedredLk
                   +          l+L s+L+kP+Q+  kY LLL+el + +     +   L+
   mFLJ00068   707 H----------LDLASYLLKPIQHMSKYALLLQELARACGGPAQELGALQ 746  

                   kAleaikelasqvNe<-*
                    A+ +++  +++ N+   
   mFLJ00068   747 AAQSLVHFQLRHGND    761  

PH: domain 1 of 1, from 775 to 882: score 28.3, E = 0.001
                   *->vikeGwLlkks......k.swkkryfvLfngvLlyyksk........
                      +  +G+L ++   + + +++   r ++Lf+  Ll+ k+++++ + + 
   mFLJ00068   775    LKEQGQLVRQDeftvraGrHKACRRVFLFEELLLFSKPRrgpagvdi 821  

                   .kpkgsipLsgcsvre.p....cFeivt.dr....tlllqAeseeereeW
                    ++k s+ +s    +     +  Fei+++ r+ ++ ++lqA++  +++ W
   mFLJ00068   822 fTYKRSFKVSLHDPDLcLqcpiRFEIWFrRRkardLFVLQASDVATKQAW 871  

                   vealqsaiaka<-*
                    + + +++ ++   
   mFLJ00068   872 TADISRLLWRQ    882  

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