hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg21780/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00068  ( 1002 res)   mbg21780

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RhoGEF   RhoGEF domain                                   87.6    2.5e-22   1
PH       PH domain                                       20.3      0.046   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
RhoGEF     1/1     589   761 ..     1   207 []    87.6  2.5e-22
PH         1/1     775   880 ..     1    92 []    20.3    0.046

Alignments of top-scoring domains:
RhoGEF: domain 1 of 1, from 589 to 761: score 87.6, E = 2.5e-22
                   *->vlkElleTEkkYvrdLeildnvymkpLreaaisskpvltpddietiF
                      vl+E+++TE++Yvr L + +++y  +L+++     p   + +  ++F
   mFLJ00068   589    VLAEMVATEREYVRALDYTIQNYFPELDRPDV---PQGLRGQRAHLF 632  

                   sNiediyefhreFLkssLearisssqfedlDekkiepsaqrlGdlFlklk
                   +N+e++ +fh  F++ +Lea+ +               ++r++  Fl++ 
   mFLJ00068   633 GNLEKLRDFHYNFFLRELEACTRH--------------PPRVAHAFLRHV 668  

                   epflqvYgeYcsnkpyAqelleklrqaasnpqFaefldeveassntgAkd
                   ++++ +Y+ Y +nkp++  l +     +  + F+e+ + ++ +       
   mFLJ00068   669 SSIGHHYALYSKNKPRSDALMTN----YGHTFFKEKQQALGDH------- 707  

                   davkltLqsLLlkPvqRilrYpLLLkeLLkhtpegedqpdredLkkaldl
                       l+L s+LlkP+q+  +Y LLL+eL          ++   L++a++l
   mFLJ00068   708 ----LDLASYLLKPIQHMSKYALLLQELARACGG--PAQELGALQAAQSL 751  

                   lqdlaksiNe<-*
                   ++  +++ N+   
   mFLJ00068   752 VHFQLRHGND    761  

PH: domain 1 of 1, from 775 to 880: score 20.3, E = 0.046
                   *->vikeGwLlkkg.....gkkswkkRyfvLfndvLlyykdkk.......
                      ++ +G L ++++ + ++++    R ++Lf+  Ll+ k++ ++ + + 
   mFLJ00068   775    LKEQGQLVRQDeftvrAGRHKACRRVFLFEELLLFSKPRRgpagvdi 821  

                   kkpkgsipLsgiqvekvpdnkrkncFeirt.dr...etlllqaeseeerk
                   +++k+s+ +s    + +     +  Fei+++ r+ ++ ++lqa++   ++
   mFLJ00068   822 FTYKRSFKVSLHDPDLCLQ--CPIRFEIWFrRRkarDLFVLQASDVATKQ 869  

                   eWvkaiqsair<-*
                    W ++i++++    
   mFLJ00068   870 AWTADISRLLW    880  

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