hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/msh/msh44296/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00067  ( 891 res)   msh44296

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
C2       Protein kinase C conserved region 2 (CalB)      47.8    1.4e-09   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
C2         1/1     731   839 ..     1    92 []    47.8  1.4e-09

Alignments of top-scoring domains:
C2: domain 1 of 1, from 731 to 839: score 47.8, E = 1.4e-09
                   *->tLtvkiisArnLp........DPYVkvs.............kTkvvk
                      +L+v ++sA  L + ++++++DP+V ++  +++  +   ++ T  +k
   mFLJ00067   731    RLRVELLSASSLLpldsngssDPFVQLTleprhefpevaprETQKHK 777  

                   ktlsgfNPvWnEesetFeFevpp.......s.LeieVyDk......dfiG
                   k l   +P ++E   tFeF vp ++ ++  + L ++V D+++ + +d+ G
   mFLJ00067   778 KEL---HPLFDE---TFEFLVPAepcqkawAcLLLTVLDHdrlgadDLEG 821  

                   rvtippnnahqhsadglihlsell.ggrh.kl<-*
                   ++ +p              l+++++     +    
   mFLJ00067   822 EAFLP--------------LCRVPgLTDCaEP    839  

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