hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/msh/msh44296/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00067  ( 891 res)   msh44296

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
C2       C2 domain                                       82.0    1.2e-20   1
DUF1041  Domain of Unknown Function (DUF1041)            47.5      3e-10   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
DUF1041    1/1     262   334 ..     1   122 []    47.5    3e-10
C2         1/1     732   824 ..     1    88 []    82.0  1.2e-20

Alignments of top-scoring domains:
DUF1041: domain 1 of 1, from 262 to 334: score 47.5, E = 3e-10
                   *->ktvvkdclkaaarvwydfifenakieermekqveqpgpqraPvvpCI
                      +++v ++l+ ++ +w+ ++ +++  +++m                  
   mFLJ00067   262    SQLVSEALRMGTVEWF-HLMQQH--HQPM------------------ 287  

                   LMNNvQglrvqlekkledmGGikLielvisvLkelqeklnevLnqFpqel
                         g+ ++++++l  +      ++v+++L ++ +++n++++      
   mFLJ00067   288 ------GILEAGKALLNLV------QDVMGDLYQCRRTWNKIFH------ 319  

                   nlgkesAedlwslfavdldsaleEq<-*
                             ++l++  +++a+ E    
   mFLJ00067   320 ----------NVLKIDLFSMAFLEL    334  

C2: domain 1 of 1, from 732 to 824: score 82.0, E = 1.2e-20
                   *->LrVtvieAknLppkDfkngksDPYVkvslggdkkd.qk..kkTkvik
                      LrV +++A  L p D +ng+sDP+V ++l + +  + + ++ T  +k
   mFLJ00067   732    LRVELLSASSLLPLD-SNGSSDPFVQLTLEPRHEFpEVapRETQKHK 777  

                   ktlNPvWNEtFtFevpppdlqe...tLeieVyDydrfgrddflGevs<-*
                   k l+P ++EtF+F vp +++q+   +L ++V D+dr+g dd+ Ge+    
   mFLJ00067   778 KELHPLFDETFEFLVPAEPCQKawaCLLLTVLDHDRLGADDLEGEAF    824  

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