hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpj/mpj04880/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00064  ( 401 res)   mpj04880

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N 
--------      -----------                               -----    ------- ---
Peptidase_M20 Peptidase family M20/M25/M40               62.9      7e-15   1
M20_dimer     Peptidase dimerisation domain              43.6    4.5e-09   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
Peptidase_M20   1/1      96   254 ..     1   280 []    62.9    7e-15
M20_dimer       1/1     209   370 ..     1   116 []    43.6  4.5e-09

Alignments of top-scoring domains:
Peptidase_M20: domain 1 of 1, from 96 to 254: score 62.9, E = 7e-15
                RF    xxxxxxxxxxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxx
                   *->llraHmDvVPiqEdetgwrpyaStfdPF.lvekdgrWddsPFpteeg
                      ++++H+Dv+P  + e+gw      ++PF+lve++g+           
   mFLJ00064    96    CIYGHLDVQP-AALEDGW-----DSEPFtLVEREGK----------- 125  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   GvpGvprigrmhgrGhdDhkggllaalealaalkaaggklkgtvkllfqp
                             ++grG++D+kg +++++ al+a+++ g++ ++++++  ++
   mFLJ00064   126 ----------LYGRGSTDDKGPVAGWMNALEAYQKTGQEIPVNLRFCLEG 165  

                RF xxxxxxxxxxxxxxxx xxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxx
                   dEEgggfglaallgsk.eaglgkadveli.GaramiedGsleALrGyhad
                    EE+g++gl++l+ + ++++++++d+++i++ +++ +             
   mFLJ00064   166 MEESGSEGLDELIFAQkDKFFKDVDYVCIsDNYWLGKN------------ 203  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   dpagveGalefgvdaifglHvwpdlgvvGEptgrpgvlagvVtvhivgtv
                                          +++++G                     
   mFLJ00064   204 ----------------------KPCITYG--------------------- 210  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   ndplvaalrealakelglgeenvvdgpepepsgggeDaaffaekvpglgf
                               ++                                g+++
   mFLJ00064   211 ------------LR--------------------------------GICY 216  

                RF xxxxxxxxx xxxxxxxxxx xxxxxxxxxxxxxxxxx   
                   pmlgvGpgd.laHspnEyvd.eddlekgaevlarllee<-*
                   ++++v + d+ +Hs  +  +  +++   + ++  l+ +   
   mFLJ00064   217 FFIEVECSDkDLHSGVYGGSvHEAMTDLISLMGCLVDK    254  

M20_dimer: domain 1 of 1, from 209 to 370: score 43.6, E = 4.5e-09
                   *->igrkGlaggkltVkvkGkagHsgsypglgvNAikmhvillarllaeL
                      +g++G++ + ++V++  k+ Hsg+y+g +  A++     l+ l   L
   mFLJ00064   209    YGLRGICYFFIEVECSDKDLHSGVYGGSVHEAMT----DLISLMGCL 251  

                   paedgd............................................
                    +++g    ++ ++   + +++++   ++ + + ++  ++ + ++  ++ 
   mFLJ00064   252 VDKKGKilipgindavapvtdeehalydhidfdmeefakdvgaetllhsc 301  

                   ........fprttlnitgieGGtyhlgatNviPaeaeakfdiRDFDllpg
                   +++   +++ +++l + gieG + + ga++viP++   kf+iR   l+p 
   mFLJ00064   302 kkdilmhrWRYPSLSLHGIEGAFSGSGAKTVIPRKVVGKFSIR---LVPD 348  

                   edleellkeieaileeeap.ge<-*
                   + +e + +++  +l++ +++ +   
   mFLJ00064   349 MIPEVVSEQVSSYLSKNLLnCR    370  

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