hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm11169/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00062  ( 852 res)   mpm11169

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N 
--------      -----------                               -----    ------- ---
Hist_deacetyl Histone deacetylase domain                264.9      1e-75   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
Hist_deacetyl   1/1     303   766 ..     1   347 []   264.9    1e-75

Alignments of top-scoring domains:
Hist_deacetyl: domain 1 of 1, from 303 to 766: score 264.9, E = 1e-75
                   *->tvayvydpevlnyhfktisygagHpenpeRlrlihelLleygllkkm
                       +   +dp v++    t+      p+  +  +l+ e L+ +gl++++
   mFLJ00062   303    QPILLLDPSVSHAPLWTVPGLGPLPFHFAQPLLTTERLSGSGLHRPL 349  

                   eivtns............................................
                   + ++  + +++ + ++   + ++++++ +++ +  ++  ++++++ ++++
   mFLJ00062   350 NRTRSEplppsataspllaplqprqdrlkphvqlikpaisppqrpakpse 399  

                   ..................................qeprkatdeelllvHs
                   +++ ++ ++ ++ ++++++ ++  +++ +++++++ p +    + l+ H 
   mFLJ00062   400 kprlrqipsaedletdgggvgpmandglehresgRGPPEGRGSISLQQHQ 449  

                   edyveflesvsptnlekldkgt............................
                   + ++ + ++++ +  ++ ++++   +  + ++++ +++++++  + +  +
   mFLJ00062   450 QVPPWEQQHLAGRLSQGSPGDSvliplaqvghrplsrtqsspaapvslls 499  

                   ..........Neielkyfn.....vgdDtpvfaglye.aaqlsvGgalda
                   ++++ +++  N++e++ +    ++v+ Dt +++   ++aa+ ++G + d+
   mFLJ00062   500 peptcqtqvlNSSETPATGlvydsVDTDTIWNELHSSnAARWAAGSVTDL 549  

                   adrllegeldiainwagGPgHHAkkgeasGFCylNniAiAIlellkkyPy
                   a ++++ el+++++++++PgHHA++++a+GFC++N +AiA + l++ + +
   mFLJ00062   550 AFKVASRELKNGFAVVRPPGHHADHSTAMGFCFFNSVAIACRQLQQHG-K 598  

                   veRvliiDiDvHHGDGTQeiFYnddrVltvSfHkygkGefFPGTieGdit
                   + ++li+D+DvHHG+GTQ+ FY+d+ Vl++S+H+++ G+fFPG+  G ++
   mFLJ00062   599 ASKILIVDWDVHHGNGTQQTFYQDPSVLYISLHRHDDGNFFPGS--GAVD 646  

                   eiGkgkGkgytlNiPLl....edGtdDesYleafktiiepvleqFkPdai
                   e+G+g G+g+++N+ + ++ +++ ++D +Yl+af+ +++p++++F Pd++
   mFLJ00062   647 EVGTGSGEGFNVNVAWAggldPP-MGDPEYLAAFRIVVMPIAREFAPDLV 695  

                   vvsaGfDalegDptmqLgsfnLTiegygeivrflkslaqkhcdgpllvVl
                   +vsaGfDa eg+p   Lg+++++ +++g+++  l++la    +g +++ l
   mFLJ00062   696 LVSAGFDAAEGHP-APLGGYHVSAKCFGYMTQQLMNLA----GGAVVLAL 740  

                   EGGYtlraiasavarcwialtggllg<-*
                   EGG +l ai+ a   c++al+g  ++   
   mFLJ00062   741 EGGHDLTAICDASEACVAALLGNKVD    766  

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