hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mid/mid34019/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00061  ( 280 res)   mid34019

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
DUF1681  Protein of unknown function (DUF1681)          420.1   2.1e-122   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
DUF1681    1/1       4   190 ..     1   204 []   420.1 2.1e-122

Alignments of top-scoring domains:
DUF1681: domain 1 of 1, from 4 to 190: score 420.1, E = 2.1e-122
                   *->meyEsvLivvpeVvVYkIPPrastsGykAaDWdleapiWtGRLRivs
                       eyEsvL+v+p+V+VY+IPPras++Gy+A+DW+l++p+WtGRLRi+s
   mFLJ00061     4    LEYESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITS 50   

                   kGeacsikLEDptTGdLfAaaPidtypGtvEaaVEavsDSSRYFViRVqD
                   kG+ ++ikLED+++G+LfA+aP+++ypG   +aVE+v+DSSRYFViR+qD
   mFLJ00061    51 KGKIAYIKLEDKVSGELFAQAPVEQYPG---IAVETVTDSSRYFVIRIQD 97   

                   pTnGkkAFIGlGFqERseAFDFnVALqDHfKylkrkaevekGelikssqk
                   + +G++AFIG+GF +R++AFDFnV LqDHfK++k++ e++k     +sq+
   mFLJ00061    98 G-TGRSAFIGIGFTDRGDAFDFNVSLQDHFKWVKQETEISK-----ESQE 141  

                   qqaepklDlsLKEGETIkiNLgkkkkkdggrpsvppggdlGsgsppplsa
                   ++++pklDl++KEG+TIk+ +g+++ k+gg+ +++++g+   g++     
   mFLJ00061   142 MDNRPKLDLGFKEGQTIKLSIGNITAKKGGASKPRASGTG--GLS----- 184  

                   flLPPPP<-*
                    lLPPPP   
   mFLJ00061   185 -LLPPPP    190  

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