hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/msj/msj09017/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00055  ( 442 res)   msj09017

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
IG       Immunoglobulin                                  91.1    1.3e-22   4
IGc2     Immunoglobulin C-2 Type                         74.9      1e-17   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
IGc2       1/4      15    74 ..     1    56 []    26.9   0.0029
IG         1/4       9    86 ..     1    58 []    34.4  1.6e-05
IGc2       2/4     106   176 ..     1    56 []    18.6    0.064
IG         2/4      95   188 ..     1    58 []     9.6       16
IGc2       3/4     201   263 ..     1    56 []    15.5     0.14
IG         3/4     195   275 ..     1    58 []    39.3  5.3e-07
IGc2       4/4     290   365 ..     1    56 []    14.5     0.17
IG         4/4     281   380 ..     1    58 []     7.9       25

Alignments of top-scoring domains:
IGc2: domain 1 of 4, from 15 to 74: score 26.9, E = 0.0029
                   *->leGqsVtLtCp.asgdpvpnItWlk.gkplp..sgstLtiknvsleD
                       eG++Vt tC++ ++   +   W+++g +l+++  s+L++   ++++
   mFLJ00055    15    PEGEPVTVTCEdPAALSSALYAWFHnGHWLQegPASSLQFLVTTRAH 61   

                   sGlYtCvArNsvg<-*
                   +G Y C++    g   
   mFLJ00055    62 AGAYFCQVHDTQG    74   

IG: domain 1 of 4, from 9 to 86: score 34.4, E = 1.6e-05
                   *->pp.vtvkeGesvtLtC.as......titWy.............LtI.
                       p+ +v eGe+vt tC+ +   ++  + W+++++  + ++ ++L++ 
   mFLJ00055     9    NPsGSVPEGEPVTVTCeDPaalssaLYAWFhnghwlqegpassLQFl 55   

                   nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-*
                     t++++   G Y+C+++++ g+ ss  ++ L++l   
   mFLJ00055    56 VTTRAHA---GAYFCQVHdtQGTRSS-RPASLQIL    86   

IGc2: domain 2 of 4, from 106 to 176: score 18.6, E = 0.064
                   *->leGqsVtLtCpasgdpvpnItWlk.gkplp.................
                           V+++C ++  p ++    ++gk l+ +++++++ ++ ++ + 
   mFLJ00055   106    -----VVIQCTVDSEPPAEMVLSHnGKVLAasherhssasgighiqv 147  

                   ..sgstLtiknvsleDsGlYtCvArNsvg<-*
                    ++  +L++++v+l+D  +Y+C+A+N  g   
   mFLJ00055   148 arNALRLQVQDVTLGDGNTYVCTAQNTLG    176  

IG: domain 2 of 4, from 95 to 188: score 9.6, E = 16
                   *->pp.vtvkeGesvtLtC.as.....titWy..................
                      ++    +    v+++C++ + ++ ++ ++++++    ++ ++++ ++
   mFLJ00055    95    SSfRDSRTRLMVVIQCtVDseppaEMVLShngkvlaasherhssasg 141  

                   ............LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtV
                    ++ +  ++  +L++++vt+ D     tY+C+a+++ gs+s      Lt 
   mFLJ00055   142 ighiqvarnalrLQVqDVTLGDG---NTYVCTAQntLGSIST-TQRLLTE 187  

                   l<-*
                   +   
   mFLJ00055   188 T    188  

IGc2: domain 3 of 4, from 201 to 263: score 15.5, E = 0.14
                   *->leGqsVtLtCpasgdpvpn....ItWlk.gkplp..sgstLtiknvs
                       eG+++ L C   g  +p++++++tW+ +  +l +    tL++++v 
   mFLJ00055   201    PEGTALNLSCLLPGGSGPTgnssFTWFWnRHRLHsaPVPTLSFTPVV 247  

                   leDsGlYtCvArNsvg<-*
                   ++++GlY+C+A  + g   
   mFLJ00055   248 RAQAGLYHCRADLPTG    263  

IG: domain 3 of 4, from 195 to 275: score 39.3, E = 5.3e-07
                   *->pp.vtvkeGesvtLtC.as.........titWy.............L
                       p++ v eG  ++L+C  ++++++++++++tW+ ++++ ++ + ++L
   mFLJ00055   195    EPgLDVPEGTALNLSClLPggsgptgnsSFTWFwnrhrlhsapvptL 241  

                   tI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-*
                    +++v ++ +   G Y C+a  + g ++s  ++ L+Vl   
   mFLJ00055   242 SFtPVVRAQA---GLYHCRADlpTGATTS-APVMLRVL    275  

IGc2: domain 4 of 4, from 290 to 365: score 14.5, E = 0.17
                   *->leGqsVtLtCpasgdpvpnItWlkgkplp..................
                      + G + +L C+++  p +  t  +g++l  +++ ++ +++++ + + 
   mFLJ00055   290    QGGHQGILDCRVDSEPLAILTLHRGSQLVasnqlhdaptkphirvta 336  

                   ..sgstLtiknvsleDsGlYtCvArNsvg<-*
                   +++  ++ i++  ++  G+Y+C+A+N  g   
   mFLJ00055   337 ppNALRVDIEELGPSNQGEYVCTASNTLG    365  

IG: domain 4 of 4, from 281 to 380: score 7.9, E = 25
                   *->pp.vtvke...GesvtLtC.as.....titWy...............
                      p  ++ +e+++G    L C++ + +   +t++++++   +++ ++ +
   mFLJ00055   281    PTlIVFVEpqgGHQGILDCrVDseplaILTLHrgsqlvasnqlhdap 327  

                   ...............LtI.nvtpeDsesgGtYtCaat......sgsasse
                   ++++ + + +++  +  I+++ p+++   G+Y+C+a+++ ++ s sa+  
   mFLJ00055   328 tkphirvtappnalrVDIeELGPSNQ---GEYVCTASntlgsaSASAYF- 373  

                   qgttLtVl<-*
                    gt+   +   
   mFLJ00055   374 -GTRALHQ    380  

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