hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/msj/msj09017/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00055  ( 442 res)   msj09017

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
ig       Immunoglobulin domain                           71.0    2.4e-17   4
V-set    Immunoglobulin V-set domain                     19.8     0.0064   1
I-set    Immunoglobulin I-set domain                    -13.8       0.16   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
ig         1/4      17    69 ..     1    65 []    22.8   0.0083
ig         2/4     103   171 ..     1    65 []    27.3  0.00035
ig         3/4     203   258 ..     1    65 []     9.1      6.9
V-set      1/1     189   275 ..     1   130 []    19.8   0.0064
ig         4/4     292   360 ..     1    65 []    11.8      3.6
I-set      1/1     278   376 ..     1    97 []   -13.8     0.16

Alignments of top-scoring domains:
ig: domain 1 of 4, from 17 to 69: score 22.8, E = 0.0083
                   *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq
                      Ge+vt tC+    + +++ + W++ng+ l++g  +            
   mFLJ00055    17    GEPVTVTCEDP-AALSSALYAWFHNGHwLQeGPASS----------- 51   

                   tsLtitnvtpeDggtYtCvv<-*
                     L+++++t+ ++g Y+C+v   
   mFLJ00055    52 --LQFLVTTRAHAGAYFCQV    69   

ig: domain 2 of 4, from 103 to 171: score 27.3, E = 0.00035
                   *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq
                        +v ++C+v   + p++++ + +ngk l  +++ +ss ++ ++++ 
   mFLJ00055   103    RLMVVIQCTV--DSEPPAEMVLSHNGKvLAaSHERHSSASGIGHIQV 147  

                   t....sLtitnvtpeDggtYtCvv<-*
                    ++  +L++++vt +Dg tY C++   
   mFLJ00055   148 ArnalRLQVQDVTLGDGNTYVCTA    171  

ig: domain 3 of 4, from 203 to 258: score 9.1, E = 6.9
                   *->GesvtLtCsvs..gfgppdvtvtWlrngk.lt.gvlvtssenngdst
                      G  ++L+C   ++++ +   ++tW+ n ++l++  + t         
   mFLJ00055   203    GTALNLSCLLPggSGPTGNSSFTWFWNRHrLHsAPVPT--------- 240  

                   yqtsLtitnvtpeDggtYtCvv<-*
                       L++t+v +  +g Y C++   
   mFLJ00055   241 ----LSFTPVVRAQAGLYHCRA    258  

V-set: domain 1 of 1, from 189 to 275: score 19.8, E = 0.0064
                   *->qstvtqepprLLLASLfWptsvtvaeGgsvtLpCtysGtfddsssss
                      ++ vt+  ++           + v+eG+ ++L+C +    ++s + +
   mFLJ00055   189    DIRVTA--EP----------GLDVPEGTALNLSCLLP---GGSGPTG 220  

                   gtgsvyWyrqqppGekpeliiisyytyysysegngtvserfkgrvrfsgn
                   ++ s++W+   +                               r + ++ 
   mFLJ00055   221 NS-SFTWFW-NRH------------------------------RLHSAPV 238  

                   pskgdfsLtIsnlqlsDsGtYyCa.........gggtrLtVl<-*
                   p+     L+ + + ++  G Y+C  + +++ ++   ++L Vl   
   mFLJ00055   239 PT-----LSFTPVVRAQAGLYHCRadlptgattSAPVMLRVL    275  

ig: domain 4 of 4, from 292 to 360: score 11.8, E = 3.6
                   *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq
                      G+   L C+v   + p + +t++r+++ + + +l++  +      + 
   mFLJ00055   292    GHQGILDCRV--DSEPLAILTLHRGSQlVAsNQLHDAPT-----KPH 331  

                   t.........sLtitnvtpeDggtYtCvv<-*
                   ++ + +++  ++ i ++ p+  g+Y C++   
   mFLJ00055   332 IrvtappnalRVDIEELGPSNQGEYVCTA    360  

I-set: domain 1 of 1, from 278 to 376: score -13.8, E = 0.16
                   *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKdGqplssv...
                      Pk  + +  ve q G    ++C+V+ +P    + ++ G++l + ++ 
   mFLJ00055   278    PKTPTLIVFVEPQGGHQGILDCRVDSEPLAILT-LHRGSQLVASnql 323  

                   ...l.lpsdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaea
                   ++  + p  +++vt+    +  +  I +  p+  G+Y+C+A+N  G+a+a
   mFLJ00055   324 hdaPtKP--HIRVTAPP--NALRVDIEELGPSNQGEYVCTASNTLGSASA 369  

                   saeLtVq<-*
                   sa    +   
   mFLJ00055   370 SAYFGTR    376  

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