hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj40199/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mFLJ00045  ( 612 res)   mfj40199

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
WD40     WD40 repeats                                   174.7    9.2e-48   7

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
WD40       1/7     299   338 ..     1    46 []    44.7  1.3e-08
WD40       2/7     343   382 ..     1    46 []    21.4     0.13
WD40       3/7     385   424 ..     1    46 []    44.1  1.9e-08
WD40       4/7     434   480 ..     1    46 []     7.2       36
WD40       5/7     483   521 ..     1    46 []    17.2     0.93
WD40       6/7     524   567 ..     1    46 []    24.0     0.02
WD40       7/7     570   610 ..     1    46 []    24.8    0.012

Alignments of top-scoring domains:
WD40: domain 1 of 7, from 299 to 338: score 44.7, E = 1.3e-08
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      +++  +++++H+g  +V++v+fsp +      +lla+g+ D+ ++lW
   mFLJ00045   299    PtTASYVFDAHDG--EVNAVQFSPGS------RLLATGGmDRRVKLW 337  

                   d<-*
                   +   
   mFLJ00045   338 E    338  

WD40: domain 2 of 7, from 343 to 382: score 21.4, E = 0.13
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      + +   +l+g ++  ++ts+ f++ g       +l+++s+D   r+W
   mFLJ00045   343    KcEFKGSLSGSNA--GITSIEFDSAG------AYLLAASnDFASRIW 381  

                   d<-*
                       
   mFLJ00045   382 T    382  

WD40: domain 3 of 7, from 385 to 424: score 44.1, E = 1.9e-08
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      + +l +tl+gH+g   V+s +f  d+       +++sgs+D+t++lW
   mFLJ00045   385    DyRLRHTLTGHSG--KVLSAKFLLDN------ARIVSGShDRTLKLW 423  

                   d<-*
                   d   
   mFLJ00045   424 D    424  

WD40: domain 4 of 7, from 434 to 480: score 7.2, E = 36
                   *->t.kllrtlkgHtgespVtsvafspdggss..dspnllasgs.Dgtir
                      ++ ++    g  +  ++ +v f  ++ ++    ++++ sg  D++ir
   mFLJ00045   434    QsLCVLMVFGFLS--GIKTV-FAGSSCNDivCTEQCVMSGHfDKKIR 477  

                   lWd<-*
                   +Wd   
   mFLJ00045   478 FWD    480  

WD40: domain 5 of 7, from 483 to 521: score 17.2, E = 0.93
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      + +++r+++   g   +t+++ +p        + l+s+s+D  +++ 
   mFLJ00045   483    SeSVVREME-LLG--KITALDLNPER------TELLSCSrDDLLKVI 520  

                   d<-*
                   d   
   mFLJ00045   521 D    521  

WD40: domain 6 of 7, from 524 to 567: score 24.0, E = 0.02
                   *->t.kllrtlkgHtge..spVtsvafspdggssdspnllasgs.Dgtir
                      t+ + +t+++   + +s+ t v fspdg      +++a+gs  g+++
   mFLJ00045   524    TnAVKQTFSAPGFKcgSDWTRVVFSPDG------SYVAAGSaEGSLY 564  

                   lWd<-*
                   +W+   
   mFLJ00045   565 VWS    567  

WD40: domain 7 of 7, from 570 to 610: score 24.8, E = 0.012
                   *->t.kllrtlk.gHtgespVtsvafspdggssdspnllasgs.Dgtirl
                      t+k+ ++l++ H++  ++++va+ p+g       +++s ++ +   l
   mFLJ00045   570    TgKVEKVLSkQHSS--SINAVAWAPSG------LHVVSVDkGSRAVL 608  

                   Wd<-*
                   W    
   mFLJ00045   609 WA    610  

//