hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj40199/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00045  ( 612 res)   mfj40199

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
WD40     WD domain, G-beta repeat                       148.9    8.7e-41   7

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
WD40       1/7     301   338 ..     1    38 []    43.1  6.2e-09
WD40       2/7     345   382 ..     1    38 []    21.4    0.022
WD40       3/7     387   424 ..     1    38 []    38.2  1.8e-07
WD40       4/7     446   480 ..     1    38 []    11.5      7.7
WD40       5/7     485   521 ..     1    38 []    10.3       11
WD40       6/7     530   567 ..     1    38 []    15.7      1.1
WD40       7/7     572   610 ..     1    38 []    16.5     0.65

Alignments of top-scoring domains:
WD40: domain 1 of 7, from 301 to 338: score 43.1, E = 6.2e-09
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                      +  +v+++H + V++v fsp  ++lla+g+ D+ +k+W+   
   mFLJ00045   301    TASYVFdAHDGEVNAVQFSPG-SRLLATGGMDRRVKLWE    338  

WD40: domain 2 of 7, from 345 to 382: score 21.4, E = 0.022
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                      e + +l+g ++++t++ f+   g +l+ +S D   +iW    
   mFLJ00045   345    EFKGSLsGSNAGITSIEFDSA-GAYLLAASNDFASRIWT    382  

WD40: domain 3 of 7, from 387 to 424: score 38.2, E = 1.8e-07
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                       + ++l+gH++ V + +f  d   +++sgS+D+t+k+Wd   
   mFLJ00045   387    RLRHTLtGHSGKVLSAKFLLD-NARIVSGSHDRTLKLWD    424  

WD40: domain 4 of 7, from 446 to 480: score 11.5, E = 7.7
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                        +++  +  s+++++ +      ++ sg  D++i+ Wd   
   mFLJ00045   446    SGIKTVfAG-SSCNDIVCTEQ---CVMSGHFDKKIRFWD    480  

WD40: domain 5 of 7, from 485 to 521: score 10.3, E = 11
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                       ++++ +   + +t+++ +p+ ++ l+s+SrD  +k+ d   
   mFLJ00045   485    SVVREMeLL-GKITALDLNPE-RTELLSCSRDDLLKVID    521  

WD40: domain 6 of 7, from 530 to 567: score 15.7, E = 1.1
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                      +  a      s  t v fspd g+++a gS+ g++++W+   
   mFLJ00045   530    TFSAPGfKCGSDWTRVVFSPD-GSYVAAGSAEGSLYVWS    567  

WD40: domain 7 of 7, from 572 to 610: score 16.5, E = 0.65
                   *->eclavl..gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                      ++ +vl++ H+s++++va++p+ g +++s        +W    
   mFLJ00045   572    KVEKVLskQHSSSINAVAWAPS-GLHVVSVDKGSRAVLWA    610  

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