hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mej/mej02415/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00042  ( 498 res)   mej02415

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
efhand   EF hand                                         35.5    1.2e-06   2
MMR_HSR1 GTPase of unknown function                     -21.9       0.67   1
Ras      Ras family                                     -99.2        0.5   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
efhand     1/2      66    94 ..     1    29 []    10.2      9.4
efhand     2/2     186   214 ..     1    29 []    25.2   0.0015
MMR_HSR1   1/1     296   407 ..     1   140 []   -21.9     0.67
Ras        1/1     300   443 ..     1   174 []   -99.2      0.5

Alignments of top-scoring domains:
efhand: domain 1 of 2, from 66 to 94: score 10.2, E = 9.4
                   *->elkeaFkefDkDgDGkIsfeEfkaalkkl<-*
                       l ++F++ D+D+D  +s eE+ a+ k++   
   mFLJ00042    66    ALTRIFRLSDQDRDHGLSDEELNAFQKSC    94   

efhand: domain 2 of 2, from 186 to 214: score 25.2, E = 0.0015
                   *->elkeaFkefDkDgDGkIsfeEfkaalkkl<-*
                       ++++F++ D+D+DG +s  E++++++ +   
   mFLJ00042   186    FVQRMFEKHDQDHDGVLSPTELQNLFSVF    214  

MMR_HSR1: domain 1 of 1, from 296 to 407: score -21.9, E = 0.67
                   *->lrvaivGrPNVGKSTLiNaLtgk....kraiVsdyPGtTrdpnegrv
                      l   + G   VGKS ++ a +g + +++r   + +P  T++    +v
   mFLJ00042   296    LMCKVLGARGVGKSAFLQAFLGNslgeARDPPEKFPLHTIN----TV 338  

                   eldgrqiilvDTPGiiegaskgegelgertleaieeaDlilfVvDasegl
                   +++g++ +l+    + e + +++        +    +D+++++ D+s++ 
   mFLJ00042   339 RVNGQEKYLI----LCEVNADSLL-----DTSLDTTCDVACLMFDSSDPK 379  

                   t.edy.tieeDleiadllydeerernleltLqelekkgkPvilvlNKiD<
                   t  +  ti    ++ +                    +   +++++ K+D 
   mFLJ00042   380 TfVHCaTIYKRYYMDGQ-------------------TP--CLFIASKAD  407  

                   -*
                     
   mFLJ00042     -    -    

Ras: domain 1 of 1, from 300 to 443: score -99.2, E = 0.5
                   *->KlVlvGDgGVGKSsLliRFtdnkFpeeYip.......TIGvDFytkt
                         ++G  GVGKS++l  F  n+  e  +p+++ + +TI       t
   mFLJ00042   300    ---VLGARGVGKSAFLQAFLGNSLGEARDPpekfplhTI------NT 337  

                   vevdgktvkLqIWDTAGQErF........ralrpaYY.RgAqGfLLVYDI
                   v v+            GQE++    + + ++l + + + +++++ L++D 
   mFLJ00042   338 VRVN------------GQEKYlilcevnaDSLLDTSLdTTCDVACLMFDS 375  

                   TsrdSFenvkkWleeilrhadkdenvpivLVGNKcDLeddedle.l.e.k
                    ++++F ++++ ++  + + d    +p + +  K+DL      e+  +++
   mFLJ00042   376 SDPKTFVHCATIYK--RYYMD-GQ-TPCLFIASKADLP-----EgVaPpG 416  

                   qkRqVsteeGealAkelgAlpFmETSAKtneNVeeaFeelareilk<-*
                        s++e   +++++  lp               F  l  +++    
   mFLJ00042   417 L----SPAE---FCRRHR-LP-----------APASFSCLGPAMPS    443  

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