hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm09196/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00040  ( 638 res)   mpm09196

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
ANK      ankyrin repeats                                222.5    3.6e-62   8

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
ANK        1/8      92   121 ..     1    30 []    31.1  0.00015
ANK        2/8     125   154 ..     1    30 []    23.4    0.031
ANK        3/8     158   188 ..     1    30 []    29.6  0.00042
ANK        4/8     194   223 ..     1    30 []    28.2   0.0011
ANK        5/8     332   364 ..     1    30 []    24.5    0.015
ANK        6/8     365   394 ..     1    30 []    25.0     0.01
ANK        7/8     398   427 ..     1    30 []    38.7  7.7e-07
ANK        8/8     431   460 ..     1    30 []    29.4  0.00051

Alignments of top-scoring domains:
ANK: domain 1 of 8, from 92 to 121: score 31.1, E = 0.00015
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                       G+TpLH+Aa  g+ +++ +L++kga +na   
   mFLJ00040    92    RGQTPLHVAALCGQASLIDFLVSKGAVVNA    121  

ANK: domain 2 of 8, from 125 to 154: score 23.4, E = 0.031
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                      +G TpLHlA+++g  +v  lLl ++a+ ++   
   mFLJ00040   125    HGSTPLHLACQKGFQSVTLLLLHYKASTEV    154  

ANK: domain 3 of 8, from 158 to 188: score 29.6, E = 0.00042
                   *->dGrTpLHlAaengnlevvklLldkga.dina<-*
                      +G+TpLHlA+ +g++++vk+L+ ++++ + +   
   mFLJ00040   158    NGNTPLHLACTYGQEDCVKALVYYDVqACRL    188  

ANK: domain 4 of 8, from 194 to 223: score 28.2, E = 0.0011
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                       G+T+LH+Aa++g++ +++ Ll++ga   +   
   mFLJ00040   194    KGDTALHIAARWGYEGIIETLLQNGAPTAV    223  

ANK: domain 5 of 8, from 332 to 364: score 24.5, E = 0.015
                   *->dGrTpLHlAaengnlevvklLldkga...dina<-*
                      dG++pLH+Aa +g+ ++v lLl++ga ++  n    
   mFLJ00040   332    DGFSPLHMAALHGRTDLVPLLLKHGAysgARNT    364  

ANK: domain 6 of 8, from 365 to 394: score 25.0, E = 0.01
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                          pLHlA++ g+  v+k+Lld++a +n+   
   mFLJ00040   365    SQAVPLHLACQQGHFQVAKCLLDSNAKPNK    394  

ANK: domain 7 of 8, from 398 to 427: score 38.7, E = 7.7e-07
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                       G+TpL +A++ g++ev+ lLl++ga+ina   
   mFLJ00040   398    SGNTPLICACSAGHHEVAALLLQHGASINA    427  

ANK: domain 8 of 8, from 431 to 460: score 29.4, E = 0.00051
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                       G+T+LH A++  +  vv+lLl +ga++++   
   mFLJ00040   431    KGNTALHEAVMGRHTLVVELLLFYGASVDI    460  

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