hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm09196/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00040  ( 638 res)   mpm09196

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Ank      Ankyrin repeat                                 275.9    5.3e-79   8

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Ank        1/8      92   124 ..     1    33 []    42.3  1.1e-08
Ank        2/8     125   157 ..     1    33 []    33.1  6.2e-06
Ank        3/8     158   193 ..     1    33 []    32.1  1.3e-05
Ank        4/8     194   226 ..     1    33 []    36.3  6.9e-07
Ank        5/8     332   364 ..     1    33 []    37.7  2.7e-07
Ank        6/8     365   397 ..     1    33 []    27.9  0.00024
Ank        7/8     398   430 ..     1    33 []    47.2  3.7e-10
Ank        8/8     431   463 ..     1    33 []    37.1    4e-07

Alignments of top-scoring domains:
Ank: domain 1 of 8, from 92 to 124: score 42.3, E = 1.1e-08
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                       G+TPLH+Aal+g+++++ +L+s+GA +na+d    
   mFLJ00040    92    RGQTPLHVAALCGQASLIDFLVSKGAVVNATDY    124  

Ank: domain 2 of 8, from 125 to 157: score 33.1, E = 6.2e-06
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                      +G TPLHlA+++g  +v  lLl + A+  +qd+   
   mFLJ00040   125    HGSTPLHLACQKGFQSVTLLLLHYKASTEVQDN    157  

Ank: domain 3 of 8, from 158 to 193: score 32.1, E = 1.3e-05
                   *->dGfTPLHlAalrgnlevvklLls...qGAdlnaqdd<-*
                      +G+TPLHlA+ +g++++vk L++ + q + l++ +    
   mFLJ00040   158    NGNTPLHLACTYGQEDCVKALVYydvQACRLDIGNE    193  

Ank: domain 4 of 8, from 194 to 226: score 36.3, E = 6.9e-07
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                       G+T+LH+Aa++g++ +++ Ll++GA   +q++   
   mFLJ00040   194    KGDTALHIAARWGYEGIIETLLQNGAPTAVQNR    226  

Ank: domain 5 of 8, from 332 to 364: score 37.7, E = 2.7e-07
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                      dGf+PLH+Aal+g++++v lLl++GA   a++    
   mFLJ00040   332    DGFSPLHMAALHGRTDLVPLLLKHGAYSGARNT    364  

Ank: domain 6 of 8, from 365 to 397: score 27.9, E = 0.00024
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                          PLHlA++ g+ +v+k+Ll+  A +n +d    
   mFLJ00040   365    SQAVPLHLACQQGHFQVAKCLLDSNAKPNKKDL    397  

Ank: domain 7 of 8, from 398 to 430: score 47.2, E = 3.7e-10
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                       G+TPL +A++ g++ev+ lLl++GA++na ++   
   mFLJ00040   398    SGNTPLICACSAGHHEVAALLLQHGASINACNN    430  

Ank: domain 8 of 8, from 431 to 463: score 37.1, E = 4e-07
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                       G+T+LH A++  ++ vv+lLl +GA++++ ++   
   mFLJ00040   431    KGNTALHEAVMGRHTLVVELLLFYGASVDILNK    463  

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