hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mfj/mfj36335/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mFLJ00025 ( 1204 res) mfj36335 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- WD40 WD40 repeats 125.7 5.2e-33 8 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- WD40 1/8 22 61 .. 1 46 [] 5.5 66 WD40 2/8 64 103 .. 1 46 [] 48.0 1.2e-09 WD40 3/8 105 142 .. 1 46 [] 14.3 2.7 WD40 4/8 144 182 .. 1 46 [] 14.5 2.5 WD40 5/8 184 230 .. 1 46 [] 6.9 40 WD40 6/8 232 271 .. 1 46 [] 7.4 34 WD40 7/8 273 312 .. 1 46 [] 25.8 0.0058 WD40 8/8 470 505 .. 1 46 [] 8.2 25 Alignments of top-scoring domains: WD40: domain 1 of 8, from 22 to 61: score 5.5, E = 66 *->t.kllrtlk.gHtgespVtsvafspdggssdspnllasgsDgtirlW + + t+++ ++ ++++af pdg ++l+++++ + + ++ mFLJ00025 22 AmRAVLTWRdKAEQ--CIYDLAFKPDG-----TQLILAAG-NRLLVY 60 d<-* d mFLJ00025 61 D 61 WD40: domain 2 of 8, from 64 to 103: score 48.0, E = 1.2e-09 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW +++ll+ lkgH++ V++va+ dg +++asgs D++i +W mFLJ00025 64 DgTLLQPLKGHKD--TVYCVAYAKDG------KRFASGSaDKSIIIW 102 d<-* mFLJ00025 103 T 103 WD40: domain 3 of 8, from 105 to 142: score 14.3, E = 2.7 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW + + + +++ H++ ++ +v+++p ++las+s+ lW mFLJ00025 105 KlEGILKYT-HND--SIQCVSYNPVT------HQLASCSsSD-FGLW 141 d<-* + mFLJ00025 142 S 142 WD40: domain 4 of 8, from 144 to 182: score 14.5, E = 2.5 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW ++k +++ k ++ +t++++ dg ++la g +g i + mFLJ00025 144 EqKSVSKHK-SSS--KITCCSWTNDG------QYLALGMaNGIISIR 181 d<-* + mFLJ00025 182 N 182 WD40: domain 5 of 8, from 184 to 230: score 6.9, E = 40 *->t.kllrtlk...gHtgespVtsvafspdggssdspnllasgs.Dgti +++ ++++++g + p++s++++p+ + ++++la++++ ++ mFLJ00025 184 NgEEKVKIErpgGSLS--PIWSICWNPSREE--HNDILAVADwGQKL 226 rlWd<-* ++ mFLJ00025 227 SFYQ 230 WD40: domain 6 of 8, from 232 to 271: score 7.4, E = 34 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW ++k++ + + + + +++++ g +++++g++D+++ l+ mFLJ00025 232 SgKQIGKDRPLNF--DPCCISYFTKG------EYILVGGsDKQVSLF 270 d<-* mFLJ00025 271 T 271 WD40: domain 7 of 8, from 273 to 312: score 25.8, E = 0.0058 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW ++ l t ++ +V+++++ pd+ n++++g++Dgti ++ mFLJ00025 273 DgVRLGTVGEQNS--WVWTCRVKPDS------NYVVVGCqDGTISFY 311 d<-* mFLJ00025 312 Q 312 WD40: domain 8 of 8, from 470 to 505: score 8.2, E = 25 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW ll+ + +V++++ s + n la+ +++ t+ ++ mFLJ00025 470 AiVLLKQAT------AVRCLDMSASR------NKLAVVDeNDTCLVY 504 d<-* d mFLJ00025 505 D 505 //