hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj36335/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00025  ( 1204 res)   mfj36335

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
WD40     WD domain, G-beta repeat                       108.9    9.6e-29   7

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
WD40       1/7      26    61 ..     1    38 []     1.0  1.5e+02
WD40       2/7      66   103 ..     1    38 []    45.9  9.2e-10
WD40       3/7     105   142 ..     1    38 []    15.2      1.6
WD40       4/7     146   182 ..     1    38 []    12.8      5.4
WD40       5/7     189   271 ..     1    38 []    11.3      8.2
WD40       6/7     275   312 ..     1    38 []    23.3   0.0056
WD40       7/7     468   505 ..     1    38 []     5.1       47

Alignments of top-scoring domains:
WD40: domain 1 of 7, from 26 to 61: score 1.0, E = 1.5e+02
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                       ++   ++    ++++af pd g++l+ +   + + ++d   
   mFLJ00025    26    VLTWRDkAE-QCIYDLAFKPD-GTQLILAAG-NRLLVYD    61   

WD40: domain 2 of 7, from 66 to 103: score 45.9, E = 9.2e-10
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                      ++l+ l+gH+++V+cva++ d g+++asgS+D++i iW    
   mFLJ00025    66    TLLQPLkGHKDTVYCVAYAKD-GKRFASGSADKSIIIWT    103  

WD40: domain 3 of 7, from 105 to 142: score 15.2, E = 1.6
                   *->eclavl..gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                      ++  +l++ H++++ cv+++p   ++las+S+     +W+   
   mFLJ00025   105    KLEGILkyTHNDSIQCVSYNPV-THQLASCSS-SDFGLWS    142  

WD40: domain 4 of 7, from 146 to 182: score 12.8, E = 5.4
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                      + ++ ++   s +tc+++  d g++la g ++g i i +   
   mFLJ00025   146    KSVSKHkSS-SKITCCSWTND-GQYLALGMANGIISIRN    182  

WD40: domain 5 of 7, from 189 to 271: score 11.3, E = 8.2
                   *->eclavl.gHtspVtcvafspd..........................
                        +   +g  sp+++++++p+ ++ ++  + ++ + + +    +++ 
   mFLJ00025   189    VKIERPgGSLSPIWSICWNPSreehndilavadwgqklsfyqlsgkq 235  

                   ..................sgpllasgSrDgtikiWd<-*
                    +++ + + ++   +  + g++++ g++D+ + ++    
   mFLJ00025   236 igkdrplnfdpccisyftKGEYILVGGSDKQVSLFT    271  

WD40: domain 6 of 7, from 275 to 312: score 23.3, E = 0.0056
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                        l + +  +s+V+ +++ pd +++++ g+ Dgti  +    
   mFLJ00025   275    VRLGTVgEQNSWVWTCRVKPD-SNYVVVGCQDGTISFYQ    312  

WD40: domain 7 of 7, from 468 to 505: score 5.1, E = 47
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                          vl     +V+c++ s + ++ la   ++ t+ ++d   
   mFLJ00025   468    LFAIVLlKQATAVRCLDMSAS-RNKLAVVDENDTCLVYD    505  

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