hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj35214/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00021  ( 460 res)   mfj35214

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N 
--------     -----------                                -----    ------- ---
Aa_trans     Transmembrane amino acid transporter pro   -72.2    0.00046   1
Trp_Tyr_perm Tryptophan/tyrosine permease family       -283.9       0.71   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
Trp_Tyr_perm   1/1      32   426 ..     1   441 []  -283.9     0.71
Aa_trans       1/1      21   454 ..     1   461 []   -72.2  0.00046

Alignments of top-scoring domains:
Trp_Tyr_perm: domain 1 of 1, from 32 to 426: score -283.9, E = 0.71
                   *->KtpSllGGvliIAGTvIGAGMLAlPvatAGaGFipslllLillWflm
                      +         +I GT    G L +P a A aG  +sl+lLi++ f++
   mFLJ00021    32    MF-------NLIVGT----GALTMPKAFATAGWLVSLVLLIFVGFMS 67   

                   laSGLllLEvyltypeek.............ngasfgT....lAkd....
                   + +     E++ ++ ++ + ++ ++++++++ ++s +++++ l++d+ ++
   mFLJ00021    68 FVTTTFAMEAMAAANAQLrwkrmethkeeddEDSSTASdsdlLSQDnyer 117  

                   .....lLGkkgniiaglvyaFllYiLtyAYISggGsILsrl....ipemf
                    +++++L    ++ a+l                  +I+ r++ +++ +mf
   mFLJ00021   118 aekrpILSVQRRSSANLF-----------------EITDRVemgqMASMF 150  

                   gsiswsaraavlivFtllfGsfvwlgTkNavDrinrvLlfgkii......
                   +      +++v +   + f ++  l +  ++ +  +v ++++ ++ + ++
   mFLJ00021   151 F-----NKVGVNL---FYFCIITYLYGD-LAIYAAAVPVSLMQVtcsvsg 191  

                   ................aFalvfslllpkikgdlLldaatvalsdtsywpy
                   +++ + +++ + ++++aFa++ +l l +i +           + ++ +  
   mFLJ00021   192 ndscgvdtdaryndtdAFAIMIVLALVRIGKGQGEG-----HPPLANFLG 236  

                   iLsalPVfltSFGFHgnVPSLykYygknvkkvrkaIliGtaipLvlY.il
                   + + + V++ SF  +++ PSL+     +++ +++  +   a+ L+ Y++l
   mFLJ00021   237 VQNLFGVCVYSFMCQHSLPSLITPIS-SKRHITRLLFLDYALILAFYgLL 285  

                   WqlatlGnlPreeFaqIiakGGnldtlveALlgvleSpsielalelFsff
                      a++       F +    +   +tl  A   v++  ++ ++l lF  f
   mFLJ00021   286 SFTAIFC------FRGDSLMD--MYTLNFARCDVVGLAAVRFFLGLFPVF 327  

                   AlatSF..LGVaL.....GLfDyLaDlFKfvddsknGRfktgllTFlPKE
                    + t F+ ++V+L+++ + Lf     +  +    ++ R+    +T +P  
   mFLJ00021   328 TISTNFpiIAVTLrnnwkTLFHREGGTYPW----VVDRVVFPTITLVP-- 371  

                   RDRRTNGRASYNEPARARDGFEAVVMLFVLGVPLvlAlf.fPeGFlyALg
                                                   P ++A+++     l A+ 
   mFLJ00021   372 --------------------------------PILVAFCtHDLESLVAI- 388  

                   YAGglaatiwavIlPalLawkaRkrfpnapgyrVwGGnktlllvllfGiv
                    +G++a t +  ++Pa+L++  Rk  +  +                ++ +
   mFLJ00021   389 -TGAYAGTGIQYVIPAFLVYLCRKDTQLTF----------------GYGT 421  

                   vilvh<-*
                   v+      
   mFLJ00021   422 VNKHR    426  

Aa_trans: domain 1 of 1, from 21 to 454: score -72.2, E = 0.00046
                   *->rtisalqavfnlikaivGaGvLsLPyAfkqlGwipGlillvlvglis
                         s   ++  + + ivG+G L++P Af+ +Gw+++l+ll++vg+ s
   mFLJ00021    21    ELYSPYVGLVYMFNLIVGTGALTMPKAFATAGWLVSLVLLIFVGFMS 67   

                   lytlllLvkcskyldkv......ekgkrrksYgdlgk.asqvsy.pyrll
                   + t +   ++    ++  + ++ e++k+ ++  d   +as +++  + ++
   mFLJ00021    68 FVTTTFAMEAMAAANAQlrwkrmETHKEEDD-EDS-StASDSDLlSQDNY 115  

                   GpkmgrllinfaillnlfGvcivYlifagdnLpaifdsffsdksgendpc
                    +  +r + +++                + nL +i d +   + g+ +  
   mFLJ00021   116 ERAEKRPILSVQRR-------------SSANLFEITDRV---EMGQMASM 149  

                   hislayfilifglifipLsvflpnlsaLsilSlvaavssliy........
                   ++++++  l ++ i+     +  +l++++ +  v++  +++  +++++ +
   mFLJ00021   150 FFNKVGVNLFYFCIITY---LYGDLAIYAAAVPVSLMQVTCSvsgndscg 196  

                   ....s.igl..liivilvvivvellvltaqgvslltaswctPstfiklkg
                    +++++   ++  ++ +v++ v ++++++ g++ l+        ++   g
   mFLJ00021   197 vdtdArYNDtdAFAIMIVLALVRIGKGQGEGHPPLA--------NFL--G 236  

                   lflaiGiivFAfeGhavllpIqntmksTPskFkskpmtkvllvaiiivtv
                       +G+ v++f +++ l+++++ + s   k   +++t++l + +++  +
   mFLJ00021   237 VQNLFGVCVYSFMCQHSLPSLITPISS---K---RHITRLLFLDYALILA 280  

                   lyilvGlvGYltF.GnnvkgnillnlpnsdPnpvwliiivnlllvlhlll
                   +y l  +   + F+G++  +  +ln+   d   v+  ++v+++l+l  ++
   mFLJ00021   281 FYGLLSFTAIFCFrGDSLMDMYTLNFARCD---VVGLAAVRFFLGLFPVF 327  

                   s....yplqafPivemienllfrkplednseddeetseilnnasgkhtpk
                   + ++++p+ a  ++  +++l++r+                   +g  +++
   mFLJ00021   328 TistnFPIIAVTLRNNWKTLFHRE-------------------GGTYPWV 358  

                   skllrfviRsglVvvtyliAwiliPflgdllsLvGAtsgapltfilPplf
                   +   r+v+ ++ +v  +l+A      l  l++++GA +g+++ +++P+++
   mFLJ00021   359 V--DRVVFPTITLVPPILVA-FCTHDLESLVAITGAYAGTGIQYVIPAFL 405  

                   hlklkkpkkksle.......klwfkkildvicivvglllmaygvyglil<
                    ++++k ++  ++ ++ ++++  f+ ++ v+++ + ++++++ v + i+ 
   mFLJ00021   406 VYLCRKDTQLTFGygtvnkhRSPFRHTFWVAFVLLWAFSCFFFVTAYIV  454  

                   -*
                     
   mFLJ00021     -    -    

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