hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mph/mph01309/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00019  ( 962 res)   mph01309

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
ARM      Armadillo/beta-catenin-like repeats             62.4    5.6e-14   5

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
ARM        1/5     173   215 ..     1    38 []    18.8     0.77
ARM        2/5     216   257 ..     1    38 []    18.6     0.88
ARM        3/5     258   299 ..     1    38 []    22.1    0.079
ARM        4/5     301   342 ..     1    38 []     1.9  2.9e+02
ARM        5/5     389   435 ..     1    38 []    13.7      8.8

Alignments of top-scoring domains:
ARM: domain 1 of 5, from 173 to 215: score 18.8, E = 0.77
                   *->nde.nkqavvdaGglpaLvqLL....deevqkeAawaLsNlas<-*
                      ++   +++v+++Gg+ +Lv  L+  + +++q  +a+aL+Nla    
   mFLJ00019   173    TEGaCRAEVRRLGGILPLVTILqcvkTDSIQNRTARALGNLAM    215  

ARM: domain 2 of 5, from 216 to 257: score 18.6, E = 0.88
                   *->ndenkqavvdaGglpaLvqLL....deevqkeAawaLsNlas<-*
                       +e + ++  aG++p Lv+ L+  +d + ++ +++aL+Nla+   
   mFLJ00019   216    EPESCRDIHSAGAVPFLVESLtacqDSQCLQSIVRALRNLAD    257  

ARM: domain 3 of 5, from 258 to 299: score 22.1, E = 0.079
                   *->ndenkqavvdaGglpaLvqLL....deevqkeAawaLsNlas<-*
                      +++++ a+ ++G++ +L +LL + +d+ +  + ++aL  l++   
   mFLJ00019   258    SPQHRLALAQQGAVRPLAELLatapDPALTAALVRALLELSR    299  

ARM: domain 4 of 5, from 301 to 342: score 1.9, E = 2.9e+02
                   *->ndenkqavvdaG.glpaLvqLL...deevqkeAawaLsNlas<-*
                      ++ ++++   +G++l +Lv+L ++++  ++++A+  L Nl++   
   mFLJ00019   301    CSRACAEQLSLGgALGPLVSLAshpKRAIREAAILILANLCA    342  

ARM: domain 5 of 5, from 389 to 435: score 13.7, E = 8.8
                   *->nde.nkqavvdaGglpaLvqLL........deevqkeAawaLsNlas
                      ++  n++ ++daGgl++L+ LL++++ +  +++v+ + ++ L    +
   mFLJ00019   389    REAiNRARLRDAGGLELLMGLLqdpgasawHPRVVAALVGFLYDTGA 435  

                   <-*
                      
   mFLJ00019     -     -    

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