hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mph/mph01309/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00019  ( 962 res)   mph01309

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Arm      Armadillo/beta-catenin-like repeat              68.4    1.5e-16   5
BTB      BTB/POZ domain                                  -0.4      0.025   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Arm        1/5     174   215 ..     1    41 []    20.8    0.032
Arm        2/5     216   257 ..     1    41 []    21.3    0.023
Arm        3/5     258   299 ..     1    41 []    23.7   0.0043
Arm        4/5     302   342 ..     1    41 []    17.8     0.25
Arm        5/5     343   389 ..     1    41 []     1.7       49
BTB        1/1     768   892 ..     1   135 []    -0.4    0.025

Alignments of top-scoring domains:
Arm: domain 1 of 5, from 174 to 215: score 20.8, E = 0.032
                   *->npenkqavveaGalppLvqLLs.spdeevqeeAawALsNLaa<-*
                        +++ +v+++G++ pLv  L+  +  ++q   a+AL+NLa    
   mFLJ00019   174    EGACRAEVRRLGGILPLVTILQcVKTDSIQNRTARALGNLAM    215  

Arm: domain 2 of 5, from 216 to 257: score 21.3, E = 0.023
                   *->npenkqavveaGalppLvqLLs.spdeevqeeAawALsNLaa<-*
                       pe  + +  aGa+p Lv+ L+ ++d++ ++  ++AL+NLa+   
   mFLJ00019   216    EPESCRDIHSAGAVPFLVESLTaCQDSQCLQSIVRALRNLAD    257  

Arm: domain 3 of 5, from 258 to 299: score 23.7, E = 0.0043
                   *->npenkqavveaGalppLvqLLs.spdeevqeeAawALsNLaa<-*
                      +p+++ a+ ++Ga++pL +LL + pd+ +  + ++AL  L++   
   mFLJ00019   258    SPQHRLALAQQGAVRPLAELLAtAPDPALTAALVRALLELSR    299  

Arm: domain 4 of 5, from 302 to 342: score 17.8, E = 0.25
                   *->npenkqavveaGalppLvqLLsspdeevqeeAawALsNLaa<-*
                      + ++ +++   Gal pLv+L s+p+  ++e+A   L NL+a   
   mFLJ00019   302    SRACAEQLSLGGALGPLVSLASHPKRAIREAAILILANLCA    342  

Arm: domain 5 of 5, from 343 to 389: score 1.7, E = 49
                   *->npenkqavveaGalppLvqLLs......spdeevqeeAawALsNLaa
                          + a+ +aG++++L+  L+++++++ +++ +q++ ++A++ L++
   mFLJ00019   343    QGLVRPALGNAGGVEVLLGELRrrrspgGSSSATQQPLVRAVCLLCR 389  

                   <-*
                      
   mFLJ00019     -     -    

BTB: domain 1 of 1, from 768 to 892: score -0.4, E = 0.025
                   *->lnelreqg...elcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYF
                      l e ++   +    D  +v +        g +++A +a  aa+Sp+F
   mFLJ00019   768    LYEPLLGPapaPAPDLHFVLDS-------GLQLPAQRAASAAASPFF 807  

                   kalFtgqfkesiteeessvsseieledvspedfealLefiYt........
                   +al++g f    +e++++    ++l++ sp +   +L+ +++ ++ +   
   mFLJ00019   808 RALLSGSF----AEAQMD---LVPLRGLSPGAAWPVLHHLHGcrgcgaal 850  

                   gelsitqdqksPssckseenvedlLalAadllqipslvdkCeefliksl<
                   g+++++  + +       + +e+ L++A  ++ +p+l +  ee   ++  
   mFLJ00019   851 GPVPPPGQPLL------GSKAEEALEAA-GRFLLPALEEELEEAVGRIH  892  

                   -*
                     
   mFLJ00019     -    -    

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