hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm05346/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00018  ( 1372 res)   mpm05346

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RhoGEF   RhoGEF domain                                  134.2    2.3e-36   1
PH       PH domain                                       35.2    1.5e-06   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
RhoGEF     1/1     134   310 ..     1   207 []   134.2  2.3e-36
PH         1/1     336   439 ..     1    92 []    35.2  1.5e-06

Alignments of top-scoring domains:
RhoGEF: domain 1 of 1, from 134 to 310: score 134.2, E = 2.3e-36
                   *->vlkElleTEkkYvrdLeildnvymkpLreaaisskpvltpddietiF
                      v++E++eTE++YvrdL+ ++ +y+ pL +  +     l+ +++ t+F
   mFLJ00018   134    VAREIVETERAYVRDLRSIVEDYLGPLMDGRALG---LNMEQVGTLF 177  

                   sNiediyefhreFLkssLearisssqfedlDekkiepsaqrlGdlFlklk
                   +Niediyef +e+L   Le + s+                +++ +F ++ 
   mFLJ00018   178 ANIEDIYEFSSELLE-DLEGCSSAG---------------GIAECFVQR- 210  

                   epflqvYgeYcsnkpyAqelleklrqaasnpqFaefldeveassntgAkd
                   ++ +++Y+ Yc n+p++  ll+ l + +  + + ++ +    +       
   mFLJ00018   211 SEDFDIYTLYCMNYPSSLALLRELSVSPPATLWLQERQAQLRH------- 253  

                   davkltLqsLLlkPvqRilrYpLLLkeLLkhtpegedqpdredLkkaldl
                       l Lqs+LlkPvqRil+Y+LLL+eL kh  eg d+ +re+ ++a+  
   mFLJ00018   254 ---SLPLQSFLLKPVQRILKYHLLLQELGKHWAEGPDSGGREMVEEAIVS 300  

                   lqdlaksiNe<-*
                   +  +a +iN+   
   mFLJ00018   301 MTAVAWYIND    310  

PH: domain 1 of 1, from 336 to 439: score 35.2, E = 1.5e-06
                   *->vikeGwLlkkg.........gkkswkkRyfvLfndvLlyykdkk..k
                      +   G+L + g+ +++++++ + +  +R ++Lf++ Ll  k +++++
   mFLJ00018   336    LSAFGELVLEGtfrggggggPRLRGGERLLFLFSRMLLVAKRRGpeY 382  

                   kpkgsipLsgiqvekvpdnkrkncFeirt.dr..etlllqaeseeerkeW
                   ++kg i   +++v ++p+  ++ +F+++  + ++ ++l+qa+++ee++ W
   mFLJ00018   383 TYKGHIFCCNLSVSETPR--DPLGFKVSDlTIpkHRHLFQAKNQEEKRLW 430  

                   vkaiqsair<-*
                   ++++q++ +   
   mFLJ00018   431 IHCLQRLFF    439  

//