hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/msh/msh09230/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00017  ( 408 res)   msh09230

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Sec7     Sec7 domain                                    316.0    2.6e-90   1
PH       Pleckstrin homology domain.                     86.8    2.6e-21   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Sec7       1/1      73   258 ..     1   226 []   316.0  2.6e-90
PH         1/1     275   392 ..     1    82 []    86.8  2.6e-21

Alignments of top-scoring domains:
Sec7: domain 1 of 1, from 73 to 258: score 316.0, E = 2.6e-90
                   *->sknrkkllsegikkfnqkPkkGiqfLqekgflakevDdspqevAkfl
                        +++k + +g+kkfn++P+kGiq+L+e+ +l     ++ q++A+fl
   mFLJ00017    73    MAQKEKEMCIGRKKFNMDPNKGIQYLIEHKLLT----SDVQDIAQFL 115  

                   ydseSadadeseteglnkkaiGdyLgeshdefnrlvLhafvdlfdFsgkd
                   y          ++ glnk+aiG yLge  d+ n++vL afvd+++F +++
   mFLJ00017   116 Y----------KGDGLNKTAIGTYLGE-KDPINLQVLQAFVDCHEFANLN 154  

                   ldeALRefLesfrLPGEaQkIDRlleaFserYcecNpgvfskagkslski
                   l++ALR+fL+sfrLPGEaQkIDR++eaF++rYc cNpgvf+         
   mFLJ00017   155 LVQALRQFLWSFRLPGEAQKIDRMMEAFAARYCLCNPGVFR--------- 195  

                   qqllnaDaaYvLaYSlIMLNTDLHnpnvkkskakdiLvKMtkedFikNlr
                       ++D++YvL++S+IMLNT LHnpnv++        ++ +e+F++++r
   mFLJ00017   196 ----STDTCYVLSFSVIMLNTGLHNPNVRD--------RPPFERFVTMNR 233  

                   ginkeiddgedlprefLeelYdsIknnei<-*
                   gin     g dlp+e L++l+dsIk +++   
   mFLJ00017   234 GIN----SGSDLPEEQLRNLFDSIKSEPF    258  

PH: domain 1 of 1, from 275 to 392: score 86.8, E = 2.6e-21
                   *->vikeGwLlkks..k.swkkryfvLfngvLlyyksk...kpkgsipLs
                      + +eGwLlk++++ ++wk+r+f+L++++L+y++  ++++p+g+ipL+
   mFLJ00017   275    PDREGWLLKLGgrVkTWKRRWFILTDNCLYYFEFTtdkEPRGIIPLE 321  

                   gcsvre.p......cFeivt.dr......................tlllq
                   ++sv++ ++++++ c+e+++++ ++++ +  +++++++  +++++++ ++
   mFLJ00017   322 NLSVQKvEdpkkpfCLELYNpSCrgqkikacktdgdgkvvegkheSYRIS 371  

                   AeseeereeWvealqsaiaka<-*
                   A ++eer++W+ea+++ i +    
   mFLJ00017   372 AANAEERDQWIEAIRASITRV    392  

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