hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/msh/msh09230/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mFLJ00017 ( 408 res) msh09230 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Sec7 Sec7 domain 340.5 1.8e-98 1 PH PH domain 96.7 4.7e-25 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- Sec7 1/1 72 258 .. 1 221 [] 340.5 1.8e-98 PH 1/1 275 390 .. 1 92 [] 96.7 4.7e-25 Alignments of top-scoring domains: Sec7: domain 1 of 1, from 72 to 258: score 340.5, E = 1.8e-98 *->lksrk.kqliegrkkFNqkPkkGiedLiskglladdkdpqdiAkfLl ++++k+k+ +grkkFN++P kGi+ Li+ ll+ +d qdiA+fL+ mFLJ00017 72 RMAQKeKEMCIGRKKFNMDPNKGIQYLIEHKLLT--SDVQDIAQFLY 116 eeteGLdKkaiGefLGenddfniqvLneFvkNlFdFtglpLdeALRlfLk +++GL+K+aiG +LGe d+ n+qvL +Fv+ +++F +l+L++ALR+fL+ mFLJ00017 117 -KGDGLNKTAIGTYLGEKDPINLQVLQAFVD-CHEFANLNLVQALRQFLW 164 sFRLPGEaQkIdRileaFSerYiqcQyNpgvfsnkkaEDdIecvqpdaDs sFRLPGEaQkIdR++eaF+ rY+ c Npgvf ++ D+ mFLJ00017 165 SFRLPGEAQKIDRMMEAFAARYCLC--NPGVFRST-------------DT 199 ayvLsYSlIMLNTDLHNNpqVKkKkikMTledFieNnrrdLREENEYEEL +yvLs+S+IMLNT LH Np+V+++ + +e+F+ +nr mFLJ00017 200 CYVLSFSVIMLNTGLH-NPNVRDR---PPFERFVTMNR------------ 233 gindGgDlprefLtelYesIkneei<-* gin+G Dlp+e+L++l+ sIk e++ mFLJ00017 234 GINSGSDLPEEQLRNLFDSIKSEPF 258 PH: domain 1 of 1, from 275 to 390: score 96.7, E = 4.7e-25 *->vikeGwLlkkg.gkkswkkRyfvLfndvLlyykdkk.kkpkgsipLs + +eGwLlk g++ k+wk+R+f+L++++L+y++ ++k+p+g+ipL+ mFLJ00017 275 PDREGWLLKLGgRVKTWKRRWFILTDNCLYYFEFTTdKEPRGIIPLE 321 giqvekvpdnkrkncFeirt.dr.....................etlllq +++v kv+d+k+++c+e+ +++ ++++ + +++++++ ++++e++ ++ mFLJ00017 322 NLSVQKVEDPKKPFCLELYNpSCrgqkikacktdgdgkvvegkhESYRIS 371 aeseeerkeWvkaiqsair<-* a+++eer++W++ai+ +i mFLJ00017 372 AANAEERDQWIEAIRASIT 390 //